Forum "Analyse phylogénétique"

Sujet de discussion: incohérence de l'alignement multiple et de l'arbre.

[ Retour aux forums ]
incohérence de l'alignement multiple et de l'arbre.
famar
29 Nov 2009 13:32
Contribution: Pas assez limpide
bonjour,
notre groupe d'étude est les CFB bactéries et notre groupe extérieur les bactéries vertes sulfureuses, l'arbre que l'on obtient est cohérent mais je ne comprends pas le résultat de l'alignement multiple:
RÉSULTATS BRUTS:

Bacteroi9       -MkKiiKIRrfkfpfTKeKtINFASVrNkisYPDFLDIQiKSFtnFFcInytyknisNkG
Bacteroi19      -MkKiiKIRrfkfpfTKeKtINFASVrNkisYPDFLDIQiKSFtnFFcInytyknisNkG
Bacteroi8       ---------------mKSsRIsFAatqsvsEYPDFLeIQLKSFnDFFQLgTPpEKRiDEG
Bacteroi18      ------------MaldnkpRVNFASVKNpypYPDFLDvQLKSFrDFlQLDTPpEeRkNdG
Bacteroi5       -----------MsstaEnQRVNFASIKNqfpYPDFLevQLKSFQDFlQLDTPpEKRkkEG
Bacteroi14      -----------MsstaEnQRVNFASIKNqfpYPDFLevQLKSFQDFlQLDTPpEKRkkEG
Bacteroi13      -----------MssnTvnQRVNFAStKNplEYPDFLevQLKSFQDFlQLDTPpEKRkkEG
Bacteroi6       -----------MsseTQnQRINFASIKNpmqYPDFLevQLKSFQDFlQLDTPpEKRkNdG
Bacteroi15      -----------MssnTEnQRVNFASIKNpmkYPDFLevQLKSFQDFlQLDTPpEKRkNdG
Bacteroi17      ----------MatnnTQnlRksFAktrstvEYPDFLDIQvRSFkDFFQIDTPaEnRfkEG
Bacteroi16      -----------MaiknQTERksFsSIKvvkDYPDFLDIQLqSFkDFFQLDTPaEKRradG
Bacteroi7       ----------MatinpKTpRkNFsrInqiiDYPDlLgIQvqSFrDFFsLDTsvEdRsgEG
Bacteroi12      ------------MankvdQRVNFArsKhiiDYPDFLDvQLqSFreFFQIETtsDnRhtEG
Bacteroi4       ------------MltnQSsRINFAStKhvpDYPDFLDIQvKSFQDFFQMETksDaRsgEG
Bacteroi11      ------------MianQTERLNFAStKNipqYPDFLDIQvKSFkDFFQLETksDeRgNEG
Bacteroi3       -----------MMlaTnTERINFstVttkaDYPDlLDIQiKSFQDFFQLETksDKRevEG
Bacteroi2       ------------MftkQTERIsFASaKNipEYPDFLDIQiqSFQDFFQLETksDqRaNEG
GOS_109402      ------------------------------------------------------------
Bacteroi10      ------------MlaTQTERLNFsnVKNrpDYPDFLDIQiqSFQDFFQLETksDeReaEG
Bacteroi1       ----------MMqdakQgERIsFsSVKNrpDYPDFLDIQvKSFQDFFQLETksDeRgDEG
Chlorobi4       -----------------mQRVsFAkIpkviEpPDlLkvQLsSyrsFlQdDlPsDqRnDqG
Chlorobi3       -----------MVdaTpTpcIdFskIqsvikaPDlLkvQLdSFhnFiQdsvPlaKRrDqG
Chlorobi5       -----------MadaTsTpsIdFskIqsviEaPDlLkvQLdSFhnFiQdsvPlaKRreqG
Chlorobi1       mqfdksevhvkvadaTpTpsIdFskIqsiiDpPDlLkvQLdSFhnFiQdsvPlaKRkDqG
Chlorobi2       ------------MadatTpcIdFskIqsiiEpPDlLkvQLdSFhnFlQdsvPlaKRkDqG

Bacteroi9       fYKVFiEyFPIsDskNkFIidFisYkIydPlYSIEECIkRGLTYnVyirArfKi-YrTRK
Bacteroi19      fYKVFiEyFPIsDskNkFIidFisYkIydPlYSIEECIkRGLTYnVyirArfKi-YrTRK
Bacteroi8       LhKVFrEhFPIeDsRgNFVLEFiDYnlDaPkYeprECvERGvTYSVPLKAKLrL-lrn--
Bacteroi18      LYKVFAENFPITDTRNNFVLEFLDYYVDPPRYtIEEClERGLTYSVPLKAKmKL-YCT--
Bacteroi5       LYKVFAENFPIaDTRNNFVLEFLDYYIDPPRYcIDECIaRGLTYSVPLKAKLKL-YCT--
Bacteroi14      LYKVFAENFPIaDTRNNFVLEFLDYYIDPPRYcIDECIaRGLTYSVPLKAKLKL-YCT--
Bacteroi13      LYKVFAENFPIaDTRNNFVLEFLDYYIDPPRYtIDdCIERGLTYSVPLKAKLKL-YCT--
Bacteroi6       LYKVFAENFPIaDTRNNFVLEFLDYYIDPPhYtIDdClERGLTYSVPLKAKLKL-YCT--
Bacteroi15      LYKVFAENFPIaDTRNNFVLEFLDYYIDPPhYSIDEClERGLTYSVPLKAKLKL-YCT--
Bacteroi17      LYKVFAENFPIsDsRdNFILdFiDYnIDtPkYnVDECIdRGLTYaVPLKAKLrL-tCn--
Bacteroi16      LfKVFAENFPIsDsReNFtLEFiDYaVDPPkYSVgECIdRGLTYSVPLKAKLrL-lCh--
Bacteroi7       LYKVFAENFPIaDsReNFVLEFiDYllePPkYSVDEsIdRGLTYaVPLKAKLrL-iCn--
Bacteroi12      LfKVFAENFPITDsRNiFVLEFLDYFIDPPRYdIpECIdRGLTYSVPLKAKLKL-sCn--
Bacteroi4       LYstFkENFPITDTRNqFVLEFLDYFIDPPRYSVEECIERGLTYSVPLKArLKL-fCT--
Bacteroi11      LYntFmENFPITDTRNqFVLEFLDYFIDPPRYtIEECIdRGLTYSVPLKArLKL-YCT--
Bacteroi3       LYntFmENFPITDTRNqFVLEFLDYFVDPPRYSIQECIERGLTYSVPLKsrLKL-YCT--
Bacteroi2       LYntFmENFPITDTRNqFVLEFLDYFIDPPRYSIQECIERGLTYSVPLKArLKL-YCT--
GOS_109402      ------------------------------------------------------------
Bacteroi10      LYKtFmENFPITDTRNqFVLEFLDYFVDPPRYSIQECIERGLTYSVPLKArLKL-YCT--
Bacteroi1       LYntFlENFPITDTRNNFVLEFLDYFVDPPRYSIQECIERGLTYSVPLKArLKL-YCT--
Chlorobi4       LerVlrstFPITDTRglFlLEyisYsIDkPkYtVEECIERGLTYdVsLKtrLKLSYkd--
Chlorobi3       LerVlrsaFPITDTRglylLEyisYsfDkPkYtVEdCIERGLTYdVsLKvKLKLSYkd--
Chlorobi5       LeKVlrsaFPITDTRglylLEyisYsfDkPkYtVEdCIERGLTYdVsLKvKLKLSYkd--
Chlorobi1       LerVlrnaFPITDTRglylLEyisYsfDkPkYtVEdCIERGLTYdVsLKvKLKLSYkd--
Chlorobi2       LerVlrsaFPITDTRglylLEyisYsfDkPkYtVEdCIERGLTYdVsLKvKLKLSYkd--

Bacteroi9       RKITIEnkrtkyF-ETIyQDVYfGTcPYMTPsGsFifNGsERViVSQLHRSPGVFFGQyd
Bacteroi19      RKITIEnkrtkyF-ETIyQDVYfGTcPYMTPsGsFifNGsERViVSQLHRSPGVFFGQyd
Bacteroi8       ------DnDddeF-ETIeQeVfLGnIPYMTsqGsFiINGAERVVVSQiHkSPGVFFaQSk
Bacteroi18      ------DPDHEDF-gTfIQDVfLGTIPYMTsnGTFVINGAERVVVSQLHRSPGVFFGQgv
Bacteroi5       ------DPDHEDF-dTvIQDVYLGpIPYMTdRGTFVINGAERVVVSQLHRSPGVFFGQSt
Bacteroi14      ------DPDHEDF-dTvIQDVYLGpIPYMTdRGTFVINGAERVVVSQLHRSPGVFFGQSt
Bacteroi13      ------DPDHEDF-dTvIQDVfLGpIPYMTdKaTFVINGAERVVVSQLHRSPGVFFGQSv
Bacteroi6       ------DPDHEDF-dTvIQDVYLGpIPYMTPKGTFVINGAERVVVSQLHRSPGVFFGQSi
Bacteroi15      ------DPDHEDF-dTvIQDVYLGpIPYMTPKGTFVINGAERVVVSQLHRSPGVFFGQSv
Bacteroi17      ------DkDnEDF-qTIeQeVfLGnIPYMTeRGsFVINGAERViVSQLHRSPGVFFaQSk
Bacteroi16      ------DeDnEDF-ETIeQeVfLGnlPYMTeKGsFVINGAERViVSQLHRSPGVFFaQSk
Bacteroi7       ------DaDHEeF-ETIeQeVfLGnIPYMTeRGsFVINGAERViVSQLHRSPGVFFsmSk
Bacteroi12      ------DaeHEDF-ETIIQDVYLGTIPYMTPKGTFVINGAERViVSQLHRSPGVFFGQSr
Bacteroi4       ------DPeHEDF-ETIVQDVYLGTIPYMTgsGTFiINGAERVVVSQLHRSPGVFFGQSy
Bacteroi11      ------DPeHEDF-ETIVQDVYLGTIPYMTPsGTFVINGAERVVVSQLHRSPGVFFGQSf
Bacteroi3       ------DPeHEDF-ETIVQDVYLGTIPYMTPsGTFVINGAERVVVSQLHRSPGVFFGQSf
Bacteroi2       ------DPeHEDF-ETIVQDVYLGTIPYMTPsGTFVINGAERVVVSQLHRSPGVFFGQSf
GOS_109402      ------------------------------------------------------------
Bacteroi10      ------DPeHEDF-ETIVQDVYLGTIPYMTPsGTFcINGAERVVVSQLHRSPGVFFGQSf
Bacteroi1       ------DeeHEDF-ETIVQDVYLGTIPYMTPsGTFVINGAERVVVSQLHRSPGVFFGQSf
Chlorobi4       ------ePeevDwKETIVQDVYLGkIPYMTeRGTFiINGAERViVaQLHRSPGVvFseat
Chlorobi3       ------eaDetDwKETlqQeVYLGrIPYMTeRGTFivNGAERVVVaQLHRSPGVvFseai
Chlorobi5       ------eaDetDwKETIqQeVYLGrIPYMTeRGTFivNGAERVVVaQLHRSPGVvFseav
Chlorobi1       ------ePDeqDwKETIqQeVYLGrIPYMTeRGTFivNGAERVVVaQLHRSPGVvFseav
Chlorobi2       ------ePDetDwKETIqQeVYLGrIPfMTeRGTFivNGAERVVVaQLHRSPGVvFseav

Bacteroi9       ipNlpKisyARIIPlKGSWIElsTDINNVMYiYlDiKKrLPiTTLLRAlGytRDiDILnI
Bacteroi19      ipNlpKisyARIIPlKGSWIElsTDINNVMYiYlDiKKrLPiTTLLRAlGytRDiDILnI
Bacteroi8       HisGaKLYSARIIPFKGaWIEFATDvNNIMYAYIDRKKKfPiTTLLRAIGygtDKeILDl
Bacteroi18      HANGTvLYSARIIPFKGSWIEFATDINNVMYAYIDRKKKLPVTTmLRAIGyEsDRDILQI
Bacteroi5       HANGTKLYSARIIPFKGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAIGFEsDRDILEI
Bacteroi14      HANGTKLYSARIIPFKGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAIGFEsDRDILEI
Bacteroi13      HANGTKLYSARIIPFKGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAIGFEnDKDILEI
Bacteroi6       HANGTKLYSARIIPFKGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAvGFEnDKDILEI
Bacteroi15      HANGTKLYSARIIPFKGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAvGFEnDKDILEI
Bacteroi17      HtNGTKLYSARvIPFKGSWIEFATDvNNVMfAYIDRKKKfPVTTLLRAIGygsDKDILDl
Bacteroi16      HtNGTKLYSARIIPFKGSWIEFATDINNVMYAYIDRKKKfPVTTLLRAIGygsDKDILDl
Bacteroi7       HtNGsKLYSARIIPFKGSWIEFsTDvNNVMYAYIDRKKKfPVTTLLRAIGFgsDKDILDl
Bacteroi12      HtNGTKLYSARvIPFKGSWIEFATDvNNVMYAYIDRKKKfPVTTLLRAIGyDsDKDILEl
Bacteroi4       HANGTKLYSARIIPFKGSWIEFtTDINNVMYAYIDRKKKLPVTTLfRAIGFERDKDILEI
Bacteroi11      HANGTKLYSARIIPFKGSWIEFATDINNVMYAYIDRKKKLPVTTLfRAIGFERDKDILEI
Bacteroi3       HANGTKLYSARvIPFKGSWIEFATDINsVMYAYIDRKKKLPVTTLfRAIGFERDKDILgI
Bacteroi2       HANGTKLYSARvIPFKGSWIEFATDINsVMYAYIDRKKKLPVTTLfRAIGFERDKDILEI
GOS_109402      ------------------------------------------------------------
Bacteroi10      HANGTKLYSARvIPFKGSWIEFATDINsVMYAYIDRKKKLPVTTLfRAIGFERDKDILEI
Bacteroi1       HANGTKLYSARvIPFKGSWIEFATDINsVMYAYIDRKKKLPVTTLfRAIGFERDKDILEI
Chlorobi4       HpNGkKmYSAkIvPlrGSWIEFqTDINNqlfvYIDqKKKflaTsLLRAIGFpRDeDILrV
Chlorobi3       HpNGkKmYSAkIvPtrGSWIEFqTDINNqifvYIDqKKnflVTaLLRAIGFaRDeDILgl
Chlorobi5       HpNGkKmYSAkIvPtrGSWIEFqTDINNqifvYIDqKKnflVTaLLRAIGFtRDeDILgl
Chlorobi1       HpNGkKmYSAkIvPtrGSWIEFqTDINNqifvYIDqKKnflVsaLLRAIGFaKDeDILgl
Chlorobi2       HpNGkKmYSAkIvPtrGSWIEFqTDINNqifvYIDqKKnflVsaLLRAIGFtRDeDILgl

Bacteroi9       FnLAEEVnIn-KvNyKKflGRtLAARifKTsyqkF-----------EeNdilLeRnikLK
Bacteroi19      FnLAEEVnIn-KvNyKKflGRtLAARifKTsyqkF-----------EeNdilLeRnikLK
Bacteroi8       FeLsEEiKVt-KStLnqhIGRKLAARVLrsWsEDFiDEDTGEVitldRNEVVLeRnsILD
Bacteroi18      FDLcEEiKVn-KkNMKaaIGRKiAgnVmKTWtEDFVDEDTGEVVSIERNkVVveReTVit
Bacteroi5       FnLAEEVKVt-KaNLKKfIGRKLAARVLKTWvEDFVDEDTGEVVSIERNdVIiDResVLD
Bacteroi14      FnLAEEVKVt-KaNLKKfIGRKLAARVLKTWvEDFVDEDTGEVVSIERNdVIiDResVLD
Bacteroi13      FnLAEdVKVn-KTNLKKVVGRKLAARVLKTWiEDFVDEDTGEVVSIERNEVIiDReTViE
Bacteroi6       FnLAEdVKVn-KTNLKKIIGRKLAARVLKTWtEDFVDEDTGEVVSIERNEVViDReTViE
Bacteroi15      FnLAEdVKVn-KTNLKKVVGRKLAARVLKTWtEDFVDEDTGEVVSIERNEVIiDReTViE
Bacteroi17      FgLsEEVeat-KaNIKKaIGRKLAARVLrTWtEDFVDEDTGEVVSIdRNEVlLeRDsIiK
Bacteroi16      FgLsEEVsat-KTaLKKVaGRKLAARVLrTWvEDFVDEDTGEVVSIdRNEVlLeRDsVLt
Bacteroi7       FgLsEEisat-paNLKKaVGRRLAARVLrTWtEDFVDEDTGEVVSIqRNEVlLeRDstis
Bacteroi12      FDLAdEVKVS-KSgLKKyIGRKLAARVLrkWvEDFVDEDTGEVVSIdRNEVILDRDTVLE
Bacteroi4       FDLAEEVKVS-KTgLKKylGRRLAARVLnTWhEDFVDEDTGEVVSIERNEiILDRDTILE
Bacteroi11      FDLAEEiKVS-KTgIKKyaGRRLAARVLnTWhEDFVDEDTGEVVSIERNEiILDRDTILD
Bacteroi3       FDLAEEVKaS-KTgLKKylGRKLAARVLrTWhEDFVDEDTGEVVSIERNEiVLDRDTVLD
Bacteroi2       FDLsEEVKVS-KTgLKKVlGRKLAARVLnTWhEDFVDEDTGEVVSIERNEiVLDRDTVLE
GOS_109402      ------------------------------------------------------------
Bacteroi10      FDLAEEVKVt-KSgLKKVlGRKLAARVLnTWyEDFVDEDTGEVVSIERNEiVLDRDTeLE
Bacteroi1       FDLAEEVKVS-KTgLKKylGRKLAARVLnTWhEDFVDEDTGEVVSIERNEiVLDRDTVLE
Chlorobi4       FDLvEtlpVdpnSenehLIGRyLAs--------DiiDmaTGEViSar---------Tsig
Chlorobi3       FDLvEEVqlk-gvkkdrLIGqyLAA--------DiVDmnTGEVVSar---------Tait
Chlorobi5       FDLvEEVpmk-aakrerLVGqyLAs--------DiVDmqTGEVVSar---------Tait
Chlorobi1       FDLvEEiKmS-agkkdqLIGkyLAs--------DiVDmqTGEVVSar---------Tait
Chlorobi2       FDLvEEVplk-agkkeqLVGqyLAs--------DiVDmqTGEVVSar---------Tait

Bacteroi9       kyHIDiILyykiKvIsLyKknEkneknlyYSIIHNTLkKDPtNSqKEAniYIYkeLkdsf
Bacteroi19      kyHIDiILyykiKvIsLyKknEkneknlyYSIIHNTLkKDPtNSqKEAniYIYkeLkdsf
Bacteroi8       EtaVelILQSGsssvVLyrE--Di-NiADYeIIYNTLhKDnaNSEKEAVEqIYRQLRssE
Bacteroi18      EEnVDeILDSsvsTILLHKd--Ed-aankYSIIfNTLaKDPShSEiEAVnYIYRQLRNAd
Bacteroi5       sdnIeaILDSGtqnILLHrE--Dq-NlSDYaIIYNTLQKDPSNSEKEAVlYIYRQLRNAE
Bacteroi14      sdnIeaILDSGtqnILLHrE--Dq-NlSDYaIIYNTLQKDPSNSEKEAVlYIYRQLRNAE
Bacteroi13      pEHIDeIiDSGvqnILiHKE--Ep-NqSDYSIIYNTLQKDPSNSEKEAVlYIYRQLRNAd
Bacteroi6       pEHIDlIiESGvqnILvHnE--Ea-NaSDYSIIfNTLQKDPSNSEKEAVlYIYRQLRNAd
Bacteroi15      EEHIDeIiDSGvqnILvHKE--Ea-NsSDYSIIfNTLQKDPSNSEKEAVlYIYRQLRNAd
Bacteroi17      EEdIniIvESGsKsIILHrE--Dv-NiADYtIIYNTLQKDnSNSEKEAVEqIYRQLRNtd
Bacteroi16      EEdIemILDSGsKsIILHrE--Dv-NiADfSIvYNTLQKDnSNSEKEAVEvIYRQLRNtE
Bacteroi7       addIDvILESGqKsIImHKE--Dm-NvADYnIIYNTLQKDsSNSdKEAVEqIYRQLRNAE
Bacteroi12      DdHIDmIiDaGvKTIILsKd--DgasqADYtIIYNTLQKDtSNSEKEAVEnIYRaLRNAE
Bacteroi4       kEHIDqIvESnaKTILLHKE--De-rsvDYnIIHNTLQKDPtNSEKEAVEHIYRQLRNAE
Bacteroi11      kdnIeeIiEadvKTILLHKE--Dn-NaADYtIIHNTLQKDPtNSEKEAVEHIYRQLRNAE
Bacteroi3       kEHIDeImESqaKTILLHKE--Dn-qsADYaIIHNTLQKDPtNSEKEAVEHIYRQLRNAE
Bacteroi2       kEHIDqIiEtdvKTILLHKE--nn-aqSDYaIIHNTLQKDPtNSEKEAVEHIYRQLRNAE
GOS_109402      ------------------------------------------------------------
Bacteroi10      kEHIeeILEtGtKTILLHKE--Dn-stgDYaIIHNTLQKDPtNSEKEAVEHIYRQLRNAE
Bacteroi1       kEHVeeILEaGaKTvLLHKE--Dn-qqADYaIIHNTLQKDPtNSEKEAVEHIYRQLRNAE
Chlorobi4       EdeVqkIiEaGiqrvkvsrt--EketklDkSvIttTLlKDkastEeEAlEmIYqeLRanE
Chlorobi3       EEvleqIiaaGqKsvkvmKtFnggDkgqDkSIvsNTilnDsSatEeEAlEivYeeLRanE
Chlorobi5       EEvfeqIqaaGyKsvkimKsFngsDkgqDkSIviNTilnDsSatEeEAlEivYeeLRanE
Chlorobi1       EdifeqILaaGyKavkvmKsYsgsDkgqDkSIIiNTilnDsSatEeEAlEivYeeLRanE
Chlorobi2       EEifeqILaaGyKsvkvmKsFaggDkgkDkSIIiNTilnDsSatEeEAlEivYeeLRanE

Bacteroi9       PknDKkAklfInKfFFdeth--LGEVGRYklNKtLkLD----------------------
Bacteroi19      PknDKkAklfInKfFFdeth--LGEVGRYklNKtLkLD----------------------
Bacteroi8       PPDEQTAREaIqsLFFStKRYsLGEVGRYkINtKLGIn----------------------
Bacteroi18      aaDDasAREVfqnLFFSDKRYDLGEVGRYRINKKLnLD----------------------
Bacteroi5       PaDEasAREVItnLFFSeKRYDLGEVGRYRINKKLGLt----------------------
Bacteroi14      PaDEasAREVItnLFFSeKRYDLGEVGRYRINKKLGLt----------------------
Bacteroi13      PaDDasAREVInnLFFSeKRYDLGdVGRYRINKKLnLt----------------------
Bacteroi6       PaDDasAREVInnLFFSeKRYDLGdVGRYRINKKLnLD----------------------
Bacteroi15      PaDDasAREVInnLFFSeKRYDLGEVGRYRINKKLGLt----------------------
Bacteroi17      aPDEQTARDIIhnLFFSDKRYDLGEVGRYRINKKLGsg----------------------
Bacteroi16      aPDEaTAREVIhsLFFSDKRYDLGEVGRYRINKKLGLe----------------------
Bacteroi7       aPDEQTARDVIqsLFFSDKRYDLGdVGRYRINKKLGsD----------------------
Bacteroi12      PPDEETARgIIERLFFSDKRYDLGdVGRYRINrKLkMD----------------------
Bacteroi4       PPDEETARDIIDKLFFSDqRYnLGdVGRYRmNKKLGLD----------------------
Bacteroi11      PPDEETARgIIDKLFFSDqRYnLGEVGRYRmNKKLnLD----------------------
Bacteroi3       PPDEETARgIIDKLFFSDqRYnLGEVGRYRmNKKLGLD----------------------
Bacteroi2       PPDEETARgIIDKLFFSDqRYnLGEVGRYRmNKKLGLD----------------------
GOS_109402      ------------------------------------------------------------
Bacteroi10      PPDEETARgIIDKLFFSDqRYnLGEVGRYRmNKKLGLD----------------------
Bacteroi1       PPDEETARgIIDKLFFSDqRYnLGEVGRYRmNKKLGLD----------------------
Chlorobi4       aPDiEsARgLlERtFFnlKkYDLGdVGRYRINKKLryeladiqkfvkqmpdLdEiSkGIe
Chlorobi3       aPDiDaARsflERtFFnqKkYDLGEVGRYRIrKKLsneFsELESYLAGKgELKELSDaIs
Chlorobi5       aPDiDaARsflERtFFnqKkYDLGEVGRYRIgKKLsreFsEmDeYLgGKgELKqLSDtIH
Chlorobi1       aPDiDaARsflERtFFnqKkYDLGdVGRYRIrKKLareFEELvTYLSGKkELRELSDGIY
Chlorobi2       aPDiDaARsflERtFFnqKkYDLGdVGRYRIkKKLGreFEELDTYLAGKpELKkLSDtIY

Bacteroi9       --------------fpLkdQiLniEDIISIIenLIaLcNnKkEVDDIDnLaNRRVkTVGE
Bacteroi19      --------------fpLkdQiLniEDIISIIenLIaLcNnKkEVDDIDnLaNRRVkTVGE
Bacteroi8       --------------IaMDVsVLTKEDIlhIvKYLlgLINSKAtVDDIDHLSNRRlRTVGE
Bacteroi18      --------------tdMDtRVLTKDDIveIIKYLIsLVNSnAtVDDIDHLSNRRVRTiGE
Bacteroi5       --------------tsaDVKVLTKEDIIeIIKYLIELINSKAiVDDIDHLSNRRVRTVGE
Bacteroi14      --------------tsaDVKVLTKEDIIeIIKYLIELINSKAiVDDIDHLSNRRVRTVGE
Bacteroi13      --------------tdMDVRVLTKEDIIeIIKYLIELINSKADVDDIDHLSNRRVRTVGE
Bacteroi6       --------------tpMDVRVLTKQDIIeIIKYLIELINSKADVDDIDHLSNRRVRTVGE
Bacteroi15      --------------tdMDVKVLTKQDIIeIIKYLIELINSKADVDDIDHLSNRRVRTVGE
Bacteroi17      --------------mGseVKVLTKEDIINIvKYLIgLINSrAvVDDIDHLSNRRVRTmGE
Bacteroi16      --------------IeaekiVLTKQDIISIvKYLIgLINSKAvVDDIDHLSNRRVRTVGE
Bacteroi7       --------------tsLDVRVLTtgDIvSIvKYLIgLINaKAvVDDIDHLSNRRVRTVGE
Bacteroi12      --------------tpdhVKVLTKaDIIAIvKYLIKLINSKeEVDDIDHLSNRRVRTVGE
Bacteroi4       --------------IpMekQVLTKEDIITIvKYLIELINSKAEVDDIDHLSNRRVRTVGE
Bacteroi11      --------------IpMekQVLTKEDIITIvKYLIELINSKAEiDDIDHLSNRRVRTVGE
Bacteroi3       --------------IaMDkQVLTKEDIITIIKYLIELINSKAEiDDIDHLSNRRVRTVGE
Bacteroi2       --------------IGMDkQVLTKEDIITIIKYLIELINSKAEiDDIDHLSNRRVRTVGE
GOS_109402      ------------------------------------------------------------
Bacteroi10      --------------IaMDkQVLTKEDIITIIKYLIELINSKAEiDDIDHLSNRRVRTVGE
Bacteroi1       --------------IeMDkQVLTKlDIITIIKYLIELINaKAEiDDIDHLSNRRVRTVGE
Chlorobi4       DrIarlvyevdgkPLdsDVtVLThyDIISIIlYLIKLlNgKtEVDDvDHLaNRRVRTVGE
Chlorobi3       aKInQTIQSFSDEPVGeDtlVLThyDIISvInYLIKLVNgqAEVDDvDHLaNRRVRsVGE
Chlorobi5       qKIlQTIQSFSDEPIGeeVlVLThlDIIAvInYLIKLVNgqAEVDDvDHLaNRRVRsVGE
Chlorobi1       qKIlQTIQSFSDEPVGdDIlVLThfDIIAvInYLIKLVNgqAEVDDvDHLaNRRVRsVGE
Chlorobi2       DKIlQTIQSFSDEPVGeDIlVLThyDIISvIyYLInLVNglAEVDDvDHLaNRRVRsVGE

Bacteroi9       QLytQytiGiARvsRiIkERiNVkDNEtlTPLeLINsKTLtSVINSFFGTdELSQFMDQT
Bacteroi19      QLytQytiGiARvsRiIkERiNVkDNEtlTPLeLINsKTLtSVINSFFGTdELSQFMDQT
Bacteroi8       QLytQFelGLsRMARTIRERMNVRDNEeFkPsDLvNArTLSSVINtFFGTNpLSQFMDQv
Bacteroi18      QLAnQFsiGLARMnRTIRERMNVRDsEVFqPtDLINAKTiSSVINSFFGTNpLSQFMDQT
Bacteroi5       QLynQFGiGLARMsRTvRERMNVRDNEVFTPIDLINAKTiSSVvNSFFGTNaLSQFMDQT
Bacteroi14      QLynQFGiGLARMsRTvRERMNVRDNEVFTPIDLINAKTiSSVvNSFFGTNaLSQFMDQT
Bacteroi13      QLSnQFaVGLARMsRTIRERMNVRDNEVFTPIDLINAKTiSSVINSFFGTNaLSQFMDQT
Bacteroi6       QLSnQFaiGLARMsRTIRERMNVRDNEVFTPIDLINAKTiSSVINSFFGTNaLSQFMDQT
Bacteroi15      QLSnQFaiGLARMsRTIRERMNVRDNEVFTPIDLINAKTiSSVINSFFGTNaLSQFMDQT
Bacteroi17      QLySQFsVGLARMARTIkERMNVRDNEdFkPVDLINArTLSSVINSFFGTNQLSQFMDQT
Bacteroi16      QLySQFGVGLARMARTIRERMNVRDNEdFkPVDLINArTLSSVINSFFGTNQLSQFMDQT
Bacteroi7       QLyAQFGVGLARMARTIkERMNVRDNEdFkPVDLINArTLSSVINSFFGTNQLSQFMDQT
Bacteroi12      QLyAQFGVGLARMARTIRERMNIRDNEVFTPtDLINArTLSSVINSFFGTNQLSQFMDQT
Bacteroi4       QLAAQFGVGLARMARTIRERMNVRDNEVFTPLDLINAKTLSSVINSFFGTsQLSQFMDQT
Bacteroi11      QLSAQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQT
Bacteroi3       QLSqQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQT
Bacteroi2       QLSAQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQT
GOS_109402      ------------------------------------------------------------
Bacteroi10      QLSqQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQT
Bacteroi1       QLSAQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQT
Chlorobi4       QLSAQFlVGLARMAknakEklNaRDaEkiTPgDLvNArTvSSVIsSFFaTsQLSQFMDQT
Chlorobi3       QLAAQFviGLARMgknvREklNsRDsdkiaPsDLINArTvSSVvsSFFaTsQLSQFMDQT
Chlorobi5       QLAAQFviGLARMgknvREklNsRDsdkiaPaDLINArTvSSVvsSFFaTsQLSQFMDQT
Chlorobi1       QLAAQFvVGLARMgknvREklNsRDsdkiaPaDLINArTvSSVvsSFFaTsQLSQFMDQT
Chlorobi2       QLAAQFviGLARMgknvREklNsRDsdkiaPaDLINArTvSSVvsSFFaTsQLSQFMDQT

Bacteroi9       NPLAEmTHKRRiSsLGPGGLSRERAGFEiRDVnYsHYGRLCPIETPEGPNIGLISSLCVf
Bacteroi19      NPLAEmTHKRRiSsLGPGGLSRERAGFEiRDVnYsHYGRLCPIETPEGPNIGLISSLCVf
Bacteroi8       NPLsEVTHKRRiSALGPGGLSRdRAGFEiRDiHYTHYGRLCPvETPEGPNIGLISSLsVh
Bacteroi18      NPLAEVTHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIEsPEGPNIGLISSLCmY
Bacteroi5       NPLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVY
Bacteroi14      NPLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVY
Bacteroi13      NPLAEITHKRRmSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVf
Bacteroi6       NPLAEITHKRRLSALGPGGLSRdRAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVY
Bacteroi15      NPLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVY
Bacteroi17      NPLAEITHKRRmSALGPGGLSRERAGFEVRDVHYTHYGRLCtIETPEGPNIGLISSLCVh
Bacteroi16      NPLAElTHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCtIETPEGPNIGLISSLCVh
Bacteroi7       NPLAEITHKRRmSALGPGGLSRERAGFEVRDVHYTHYGRLCtIETPEGPNIGLISSLCVf
Bacteroi12      NPLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCtIETPEGPNIGLISSLCVh
Bacteroi4       NPLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLaVY
Bacteroi11      NPLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLgVY
Bacteroi3       NPLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLaVf
Bacteroi2       NPLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLsVf
GOS_109402      ------------------------------------------------------------
Bacteroi10      NPLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLsVY
Bacteroi1       NPLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLaVY
Chlorobi4       NPLAElTnKRRvSALGPGGLtRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSfCif
Chlorobi3       NPLAEmTnKRRvSALGPGGLtRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLsVY
Chlorobi5       NPLAEmTnKRRvSALGPGGLtRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLsVY
Chlorobi1       NPLAEmTnKRRvSALGPGGLtRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLsVY
Chlorobi2       NPLAEmTnKRRvSALGPGGLtRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLsVY

Bacteroi9       AKINsMGFIETPYfKVKkGKVvI-nEaPIYiSsdqEyGKlItQANAiLnyktgvLknnii
Bacteroi19      AKINsMGFIETPYfKVKkGKVvI-nEaPIYiSsdqEyGKlItQANAiLnyktgvLknnii
Bacteroi8       ArINEMGFIvTPYRKVQnGvVDv-egntqYLtAEqEdkvkIAQANSqinEkGhFIeEKVK
Bacteroi18      AKINDLGFIvTPYRRVRDsKVDMdnkDvVfLtAEEEEdqiIgQgNAPLnDdGtFVrdtVK
Bacteroi5       AKINDLGFIsTPYRKVaDGKVDfSeEglqYytAEEEEeltIAQgNAPLDDNGKFIrdKVK
Bacteroi14      AKINDLGFIsTPYRKVaDGKVDfSeEglqYytAEEEEeltIAQgNAPLDDNGKFIrdKVK
Bacteroi13      AKINDLGFIETPYRKVdnGKVDLSenglVYLtAEEEEaKiIAQgNAPLnDdGtFIrnKVK
Bacteroi6       AKINELGFIvTPYRKVKDGvVDLSnEgieYLSAEEEEdKiIAQgNAPLnDdGtFIrEKVK
Bacteroi15      AKINELGFIsTPYRKVaDGKVDISdEgieYLtAEEEEdKiIAQgNAPLDDeGKFVrEKVK
Bacteroi17      AKvNsMGFIETPYRKViDGiVDv-knQPVfLtAEEEdGahIAQANAmyDDNGnFIsdRiK
Bacteroi16      AKvNsMGFlETPYRKVKDGKVaMdkgDiVfLtAEEEddnnIAQANAPLDpkGnFVnEKVK
Bacteroi7       AKvNgMGFIETPYRvi-DGsgkL-TDElIYmtAEEEdsKyIAQANAsvDkeGnFtvEKiK
Bacteroi12      AKINnLGFIETPYkKVKDGiVqv-dEEvIYLSAEdEdGKtIAQANAayDDqGnFttsRVK
Bacteroi4       AKvNnMGFIETPYRKVEnGKikL--DElIYmSAEEEEGlkIpQANiqvDDqGniLdERlv
Bacteroi11      AKvNgMGFIETPYRKVtEGvVDL-qstPVYLSAEEEEGKmIAQANiemDaNGKitadKVi
Bacteroi3       AKvNsMGFIETPYRsVKDGvVnL-eEEPtYLSAEEEEGmhIAQANlPLngkGKidqdKVi
Bacteroi2       AKvNsMGFlETPYRKVEEGKVD--TanytfLSAEEEEGKkIAQANiPLkkdGaidaEKVi
GOS_109402      ------------------------------------------------------------
Bacteroi10      AKvNaLGFIETPYRKVdDGKinL-dEsPIYLSAEEEEGmkIAQANiPLDDkGnieaERVi
Bacteroi1       AKvNnMGFIETPYRKVEgGKiDL-ksEPqYLSAEEEEGmlIAQANnPmnDeGtiteEKVi
Chlorobi4       AevNDkGFIETPYRpVKEGQV---qDEvLfLSAEdEEsKvtvpvNvkLDaNnKialEtVQ
Chlorobi3       AeINDkGFIQTPYRvVnkGhV---TDEvLmLSAEdEEnKitvpvsikLDDkntiVdEsVQ
Chlorobi5       AeINDkGFIQTPYRvVEkGhV---TDtvVmLSAEdEEnKitvpvsiPiDaNnniavEsVQ
Chlorobi1       AeINDkGFIQTPYRvVEkGQV---TDKvVmLSAEdEEnKitvpvsvPLDENrKialEsVQ
Chlorobi2       AeINDkGFIQTPYRvVEkGQV---TgtvLmLSAEdEEnKitvpvsvPLDaNnRialEtVQ

Bacteroi9       vRvnaDFPmVNykkiNYiDVstNQIASIsASLIPFLEHDDANRALMGSNMMRQsVPLLnP
Bacteroi19      vRvnaDFPmVNykkiNYiDVstNQIASIsASLIPFLEHDDANRALMGSNMMRQsVPLLnP
Bacteroi8       tRyaGDFPIVgPEDitYMDiAPNQIvSIsASLIPFLEHnDAsRALMGSNMqRQsVPLiKP
Bacteroi18      cRqDaDyPVVgPDsVNliDVsPqQIASVsAgLIPFLEHDDghRALMGcNMMRQAVPLLhn
Bacteroi5       ARfEaDFPVVpPsEidlMDVAPqQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRt
Bacteroi14      ARfEaDFPVVpPsEidlMDVAPqQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRt
Bacteroi13      sRqDaDyPVVEPsEVelMDVAPqQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRs
Bacteroi6       ARrDaDyPVVtPDQVelMDVAPqQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLKt
Bacteroi15      ARrDaDyPVVtPDQVelMDVsPqQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRt
Bacteroi17      ARyEGDFPViaPDkVdliDiAtNQIvSVAASLIPFLEHDDANRALMGSNMqRQAVPLLRP
Bacteroi16      ARfEGDFPVlEPsEiNFMDVAPNQIvSVAASLIPFLEHDDANRALMGSNMqRQAVPLLKa
Bacteroi7       tRfEGDFPmVDPsQasYMDVAaNQIvSVAASLIPFLEHDDANRALMGSNMqRQgVPLLRP
Bacteroi12      ARyEGDFPViEPEkldlMDVAPNQItSIAASLIPFLEHDDANRALMGSNMqRQAVPLLRP
Bacteroi4       vkeDGDFPVisrEEVdYiDVAPNQIASIsASLIPFLEHDDANRALMGSNMMRQAVPLLRP
Bacteroi11      AReEGDFPVVDPtEihYtDVAPNQIASIsASLIPFLEHDDANRALMGSNMMRQAVPLLRP
Bacteroi3       ARmEGDFPVVDPtEVvYaDVAPNQIASIsASLIPFLEHDDANRALMGSNMMRQAVPLLRv
Bacteroi2       ARlEaDyPVVDPkEiNYtDVAPNQIASIsASLIPFLEHDDANRALMGSNMMRQAVPLLKP
GOS_109402      ------------------------------------------------------------
Bacteroi10      ARlEGDFPVeDPknVNYiDVAPNQIsSIsASLIPFLEHDDANRALMGSNMMRQAVPLLRv
Bacteroi1       ARmEGDFPVVDPDtVhYaDVsPNQIASIsASLIPFLEHDDANRALMGSNMMRQAVPLima
Chlorobi4       ARrkGDyPVVEaEEVdYiDVAPNQIvSaAASLIPFLEHDDANRALMGSNMqRQAVPLLis
Chlorobi3       ARtkGDyPlVpsEDVNYMDVsPvQIvSaAAaLIPFLEHDDgNRALMGaNMqRQAVPLLts
Chlorobi5       ARtkGDyPlVpsEDVNYMDVsPvQIvSaAAaLIPFLEHDDgNRALMGaNMqRQAVPLLvs
Chlorobi1       ARtkGDyPlVpaEDVNYMDVsPvQIvSaAAaLIPFLEHDDgNRALMGaNMqRQAVPLLts
Chlorobi2       ARtkGDyPVVaaEDVNYMDVsPvQIvSaAAaLIPFLEHDDgNRALMGaNMqRQAVPLLts

Bacteroi9       kAPIVGTGLEKhlAQyvnaLIyAEGDGIVEsVDANnIKvKYfnsEkEK-----LlSFEKr
Bacteroi19      kAPIVGTGLEKhlAQyvnaLIyAEGDGIVEsVDANnIKvKYfnsEkEK-----LlSFEKr
Bacteroi8       EAPIiGTGiEQhIAhDfRgLvrAEkDGViEYVDANkIivnYDlnEDEK-----LVSFErA
Bacteroi18      dAPIVGTGLEKQVceDSRTMItAEGEGViEYVDAttIRIlYDRTEDEE-----fVSFEpA
Bacteroi5       dAPIVGTGiEaQVARDSRTqImAErEGeVvFVDAtcIKIKYDRTEDEE-----fVSFEDA
Bacteroi14      dAPIVGTGiEaQVARDSRTqImAErEGeVvFVDAtcIKIKYDRTEDEE-----fVSFEDA
Bacteroi13      EAPIVGTGiERQlvRDSRTqIaAEGDGVidFVDAttIRIlYDRTEDEE-----fVSFEpA
Bacteroi6       EAPIVGTGiEKQlceDSRTqIaAEGDGVidFVDAttIRIlYDRTEDEE-----fVSFEpA
Bacteroi15      EAPIVGTGiEKQlveDSRTqIaAEGDGVVEYVDAttIRIlYDRnEDEE-----fVSFEpA
Bacteroi17      EAPIVGTGLERrVAmDSRTLliAEaDGVVEFVDANeIKmRYDlTDedr-----LVSFdsd
Bacteroi16      EsPIVGTGLEakaAvDSRSLIiAEanGVVdYVDAkkItIKYDlTDDEl-----LVnFtDe
Bacteroi7       qAPIVGTGLERrVAmDSRaLvvAEGDGeiEFVDskkIvvKYDRTDedr-----LVSFiDd
Bacteroi12      EAPIVGTGLEgrVARDSRTLInAEGDGtVEYVDANeItIKYvRnDgdr-----LVSFEgd
Bacteroi4       EAPIVGTGLEKrVvtDSRvLInAErEGtVtYVDADkIvIKYDRTEDEi-----LVSFdse
Bacteroi11      EAPIVGTGLERQVAsDSRvLInAEGnGtVEYVDANmItIKYDRTEeEr-----MVSFdsd
Bacteroi3       dAPIVGTGLERQVAtDSRvLInAEGDGeVtYVDAqrIsIKYDRTDrEi-----aISFEpe
Bacteroi2       EsPIVGTGLERQVAtDSRvLInAEGDGVVEsVDskrItIKYgRTDeEr-----LVSFdEd
GOS_109402      ------------------------------------------------------------
Bacteroi10      dsPIVGTGLERQVAsDSRvLInAEGaGtVEYVDANmvtIKYDRsEeEr-----qVSFdsd
Bacteroi1       dAPIVGTGLERQVAtDSRvLInAEGaGtVEYVDANmItIKYDRTDDEr-----LVSFdEd
Chlorobi4       dsPyVGTGLEekVARDSRTIIvAEGpGVVEkVtAHtvtIRYDKkvDdDniEgSLldtEEt
Chlorobi3       EAPvVGTGmEekVARDSRSvclgEGsGVVEeVtAeyIKvRYDinpDsn-eELSLldpdEg
Chlorobi5       EAPvVGTGmEakVARDSRSvIlgEGpGfVEeVtsefIKvRYDidtenn-ehMSLldpdEg
Chlorobi1       EAPvVGTGmEakVARDSRSvIvAEeaGtVEeVtADyIRvRYDidtenE-vhLSMldpdEg
Chlorobi2       EAPvVGTGmEgkVARDSRSvIvAEGtGVVEdVtAeyvQvRYDisvenD-vrLSLldpdEg

Bacteroi9       iKTYkLIKFRKTNQnTClNIrPIVKKGmyVtKGQVLCEGfATqNGkLALGRNiKVAFMPf
Bacteroi19      iKTYkLIKFRKTNQnTClNIrPIVKKGmyVtKGQVLCEGfATqNGkLALGRNiKVAFMPf
Bacteroi8       siTYpLLKmkgTNQgTCINLrPIVaKGdRVKqGQiLCEGYATENGELALGRNLKVAFMsW
Bacteroi18      lKeYripKFRrTNQnmvvdLrPIcdKGQRVKKGdiLtEGYATENGELALGRNLlVAyMPW
Bacteroi5       vKTYNipKwRKTNQsTtvdLKPtchRGQRVKaGdiLtEGYsTqkGELALGRNvKVAyMPW
Bacteroi14      vKTYNipKwRKTNQsTtvdLKPtchRGQRVKaGdiLtEGYsTqkGELALGRNvKVAyMPW
Bacteroi13      lKeYripKFRKTNQnmtIdLrPtcnKGdRVtKGQiLtEGYsTENGELALGkNLlVAyMPW
Bacteroi6       lKeYripKFRKTNQsmtIdLrPIcnKGQRVKKGdiLtEGYsTaNGELALGkNLlVAyMPW
Bacteroi15      lKeYripKFRKTNQsmtIdLrPtcdKGQRVKKGdiLtEGYsTqgGELALGkNLlVAyMPW
Bacteroi17      iiTYSLIKFRrTNQDTCINLKPVIQhGERVKKGQVLCEGYATdkGELALGRNLmVAFMPW
Bacteroi16      yKsYDLIKFRrTNQDTtINLtPLVlqGQkVvKGQVLvEGYsTneGELALGkNLKVAyMPW
Bacteroi7       svTYNLVKFRrTNQDTClNLqPmVlKGQkVKKGEpLCqGYgTEgGELALGRNLlVAFMPW
Bacteroi12      sKTYkLIKFkKTNQnTCINLKPIVKKGQkVvKGQVLCEGYATENGELALGRNLKVAFMPW
Bacteroi4       ltTYDLIKFRrTNQgTCINLKPIVRKGdRVhKGQVLCqGYATEqGELALGRNmKVAFMPW
Bacteroi11      dKTYqLIKyRKTNQsTCINLKPIVRKGdRVaKGQVLCEGYATqNGELAiGRNLKVAFMPW
Bacteroi3       etTYNLIKFRKTNQgTsItLKPIVKKGdRVnrGQVLCqGYATEaGELALGRNmKVAFMPW
Bacteroi2       sKTYeLVKFRKTNQgTsINLKPIVRKGEkVKKGQVLCEGYATESGELALGqNLKVAFMPW
GOS_109402      ------------------------------------------------------------
Bacteroi10      sKsYNLIKFRKTNQgTsINLKPIVKvGdRVErGQVLCqGYATEaGELALGRNmKVAFMPW
Bacteroi1       sKsYNLIKFRKTNQgTnINLKPIVKvGdRVErGQVLCqGYATEkGELALGRNmKVAFMPW
Chlorobi4       iKsYpmIKFsrsNQDTCINqKPIVsKGQRVKKGdVLadGssTEHGELALGkNvlVAFMPW
Chlorobi3       lKTYrmIKFkrsNQDTCIsqKPLVhnGQkVEKGtVLadsssTENGELALGkNvlVAFMPW
Chlorobi5       lKTYrmIKFkrsNQDTCIsqrPIVKnGQkVdKGtVLadsssTEDGELALGkNvlVAFMPW
Chlorobi1       lKTYkLIKFkrsNQDTCIsqKsLVRtaQRVaKGdVLadsssTENGELALGkNvlVAFMPW
Chlorobi2       lKTYkLIKFkrsNQDTCIsqKPmVhiGnRVEKGsVLadsssTdHGELALGkNvlVAFMPW

Bacteroi9       KGYNFEDAIVISEkVVREDwFTSIHIDEYsLEVRDTKlGmEEfTfDIPNfnEEnkKkLDk
Bacteroi19      KGYNFEDAIVISEkVVREDwFTSIHIDEYsLEVRDTKlGmEEfTfDIPNfnEEnkKkLDk
Bacteroi8       qGYNyEDAIVISERIVRdDVFTSIHIeEftmEaRDTKlGEEELTaeIPNlSEEAltnLDk
Bacteroi18      KGYNyEDAvVISERmVREDVlTSvHvDEYsLEVReTKRGvEEfTsDIPNVSEEATKDLDd
Bacteroi5       KGYNyEDAIVlnERmVREDfFTSvHvDEYiLEVReTKRGmEELTsDIPNVSEEATKDLDE
Bacteroi14      KGYNyEDAIVlnERmVREDfFTSvHvDEYiLEVReTKRGmEELTsDIPNVSEEATKDLDE
Bacteroi13      KGYNyEDAIVlnERVVREDLlTSvHveEYsLEVReTKRGmEELTsDIPNVSEEATKDLDE
Bacteroi6       KGYNyEDAIVlnERVVREDIlTSvHvDEYiLEVReTKRGmEELTsDIPNVSEEATKDLDE
Bacteroi15      KGYNyEDAIVlnERVVREDLlTSvHvDEYiLEVReTKRGmEELTsDIPNVSEEATKDLDE
Bacteroi17      qGYNFEDAIVISEkVVRdDIFTSIHIeEfELEVRDTKRGEEELTseIPNVSEEAvKnLDE
Bacteroi16      qGYNFEDAIVISERVVREDVFTSIHveEfQLEVRDTKRGEEELTseIPNVSEEAvKhLDE
Bacteroi7       qGYNFEDAIVISEkVVRdDIFTSIHIeEfELEVRDTKRGEEELTaeIPNVSEEtvKnLDE
Bacteroi12      qGYNFEDAIVInERIVREDIFTSlHIeEfELEVRDTKRGEEELTpDIPNVSEEATKDLDE
Bacteroi4       KGYNFEDAIVISERViREDIFTSIHIDEYtLdVRDTKlGvEELTnDIPNVSEdATKDLDE
Bacteroi11      KGYNFEDAIVISEkVVRdDIFTSlHIDdYtLEVRDTKlGnEELTnDIPNVSEEATKDLDE
Bacteroi3       KGYNFEDAIVISEkVVREDIFTSIHvDEYsLdVRDTKlGnEELTpDIPNVSEEATaDLDE
Bacteroi2       KGYNFEDAIVISEkVVREDIFTSIHIDEYaLEVRDTKlGaEELTnDIPNVSEEATKDLDE
GOS_109402      ------------------------------------------------------------
Bacteroi10      KGYNFEDAIVISEkVVREDIFTSIHvDEYsLdVRDTKlGnEELTnDIPNVSEEATKDLDE
Bacteroi1       KGYNFEDAIVISEkVVRdDIFTSIHIDEYsLdVRDTKlGnEELTnDIPNVSEEATKDLDE
Chlorobi4       rGYNFEDAIVlSERlVydDVFTSIHIhEfEatVRDTKRGEEqfTrDIyNVSEEAlrnLDE
Chlorobi3       rGYNFEDAIilSERlVydDVFTSIHvhEfEanVRDTKRGEEqfTrDIyNVSdEAlrnLDE
Chlorobi5       rGYNFEDAIilSERlVydDVFTSIHvhEfEanVRDTKRGEEqfTrDIyNVSdEAlrnLDE
Chlorobi1       rGYNFEDAIilSERlVydDVFTSIHIhEfEanVRDTKRGEEqfTrDIyNVSEdAlrnLDE
Chlorobi2       rGYNFEDAIilSERlVydDVFTSIHvhEfEanVRDTKRGEEqfTrDIyNVSEdAlrnLDE

Bacteroi9       yGIIkIGsEVKPGDvLIGrITPKkEgyPssEEnfLkAIFGkKvGtiKntSLKAdsSLfGV
Bacteroi19      yGIIkIGsEVKPGDvLIGrITPKkEgyPssEEnfLkAIFGkKvGtiKntSLKAdsSLfGV
Bacteroi8       NGIvaVGtsiKeGDvLIGKITPKGEaDPsPEEKLLRAIFGDKAGDVKDASLKvPPSmQGV
Bacteroi18      NGIIRVGArVePGDImIGKIsPKGESDPsPEEKLLRAIFGDKAGDVKDsSLKAnPSLsGV
Bacteroi5       rGIvRVGAriePGDILIGKITPKGESDPsPEEKLLRAIFGDKAGDVKDASLKAtPSLRGV
Bacteroi14      rGIvRVGAriePGDILIGKITPKGESDPsPEEKLLRAIFGDKAGDVKDASLKAtPSLRGV
Bacteroi13      NGIvRVGAriqPGDILIGKITPKGESDPsPEEKLLRAIFGDKAGDVKDASLKAsPSLKGV
Bacteroi6       NGIvRIGAriePGDILIGKITPKGESDPsPEEKLLRAIFGDKAGDVKDASLKAsPSLRGV
Bacteroi15      NGIvRVGAriePGDILIGKITPKGESDPsPEEKLLRAIFGDKAGDVKDASLKAsPSLRGV
Bacteroi17      NGIIRtGAEiKeGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASmKAPPSLRGV
Bacteroi16      NGVIRVGAEVKeGDIiIGKITPKGEtDPTPEEKLLRAIFGDKAGDVKDASLKAsPSLnGV
Bacteroi7       NGIvqVGtEVKeGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASkKAPPSmKGV
Bacteroi12      NGIIRVGAEVKeGDILIGKITPKGESDPsPEEKLLRAIFGDKAGDVKDASLKtPPSiKGV
Bacteroi4       NGIvRIGAniKPGDILIGKvTPKGESDPTPEEKLLRAIFGDKAGDVKDASLKAsPSLEGV
Bacteroi11      NGmIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKAsPSLhGV
Bacteroi3       qGmIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKAsPSLRGV
Bacteroi2       yGmIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKAPPSLnGV
GOS_109402      ------------------------------------------------------------
Bacteroi10      yGmIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKAsPSLnGV
Bacteroi1       NGmIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKAsPSLhGV
Chlorobi4       NGIIRVGAEVKekDILIGKITPKGEtDPTPEEKLLRAIFGeKssDVKDASLhvPPgmKGV
Chlorobi3       NGIvRIGAEVKerDILvGKITPKGESDPTPEEKLLRAIFGDKssDVKDASmhvPagmKGi
Chlorobi5       NGIvRIGAEVKerDILvGKITPKGESDPTPEEKLLRAIFGDKssDVKDASmhvPagmKGi
Chlorobi1       NGIvRIGAEVKerDILvGKITPKGESDPTPEEKLLRAIFGDKssDVKDASmhvPagmKGi
Chlorobi2       NGIvRlGAEVKerDILvGKITPKGESDPTPEEKLLRAIFGDKssDVKDASmhvPagmKGi

Bacteroi9       VIDTKiySkf--ssKedeQkqfqiKKLnnkFmknlklLrklLInKLilvLeGsvSEGilN
Bacteroi19      VIDTKiySkf--ssKedeQkqfqiKKLnnkFmknlklLrklLInKLilvLeGsvSEGilN
Bacteroi8       VIkTrLFSkpksDKnsRaKsKkeLElLkkshakqltnLraimIgKLgkLLesekSQGVyh
Bacteroi18      VIDkKLFaRAIKtresKrQDKitLaKiDeEqEaKvndLKdlLVDKLleLtedKvSEGVKd
Bacteroi5       VIeTaLFSkAVKkrKsRltDKaiLpKLDeEyEeKmasLKtlLVDKLlvLtNGKvSQGVKd
Bacteroi14      VIeTaLFSkAVKkrKsRltDKaiLpKLDeEyEeKmasLKtlLVDKLlvLtNGKvSQGVKd
Bacteroi13      iIDkKLFSRvIKNrssKlaDKalLpKiDdEFEsKvadLKriLVkKLmvLteGKvSQGVKd
Bacteroi6       VIDkKLySRvIKtrseKnaDKaiLpKLneEFEeKaaaLKaiLIDKLlvLtadKvSQGVKd
Bacteroi15      VIDkKLFSRvIKsrseKnaDKaiLpKLndEFEeKaakLKdiLIEKLlvLtNGKvSQGVKd
Bacteroi17      VIDTKLFSRpkKDKdlRiKsKkqvEtikgkyskdllaLreqmIEKLaaLLdGqTSQGVKh
Bacteroi16      VIeTKLFSRpkKDKdvRaKaKaevEKLkakyskdllgirarmInKLvtiLdGKTSlGVKh
Bacteroi7       VIDTKLFSRp--tKeeRaKhKdeLrlLmkkysrdltaLrgrvIDKLvqLtdGKTSsGVKh
Bacteroi12      VIDTKLFSRA--kKttKaEEKaaiDKLDkkyEiattnLKneLVDKLfqivNGKTSQGifN
Bacteroi4       VIgkKLFSRAVKtKqkRaKEKdemaaLDaaFnaKaeaLKdvLLEKLfsLvNGKTSQGVfN
Bacteroi11      VlDkKLFakAVKDKRkRsKDKedvDKLEtEFEvKytdLKdkLIEKLfviIdGKTSQGVmN
Bacteroi3       VIDkKLFSRAVKDKRkRaQDKediaKLEqayQsKfdnLqerLIEKLfeivsGKTSQGVfN
Bacteroi2       VIDkKLFSRSIKDKRkRsEDKeaiaKLElEyEtKfeqLKdvLVEKLfqLvNGKTSQGVmN
GOS_109402      ------------------------------------------------------------
Bacteroi10      VIDkKLFeRAIKDKRkRaQDKediaRLEvEyDaKfddLKavLVEKLfnLIgGKTaQGVKN
Bacteroi1       VInkKLFaRAIKDKRkRaKDKediavLEdkyDvKfddLqavLIEKLfkLvNGKTaQGVmN
Chlorobi4       VIkTKLFSR---kKKvgvdNKvkLEKLEkfFarKeneLKekfLtrLehyLgGKeSiGVKt
Chlorobi3       VIkTKLFSR---kKKvgmdvKekLEliDsrFErReqdLrisfekwLhkiLqGKettGlQs
Chlorobi5       VIkTKLFSR---kKKvgmdvKekLEliDarFErReieLrksfekwLrqmLqGKkvkGlts
Chlorobi1       VIkTKLFSR---kKKvgldvKdriEavDkryDqKeydLrkrfakwLnqLLdGKkttGifN
Chlorobi2       VIkTKLFSR---kKKvgmdvKekLEavDkrFDsRefdLrrrfakwLkqhLeGavSvaVns

Bacteroi9       ssyKEIIpKGKilnklnL--------------------KkLlknqeIiyq-nWvnnKyKN
Bacteroi19      ssyKEIIpKGKilnklnL--------------------KkLlknqeIiyq-nWvnnKyKN
Bacteroi8       qfGDElIAKGKplTaEliEKnLFPgKNlYRDESyYNiPEetNligeVild-nWTdnKRKN
Bacteroi18      ysdaEIItKGsKFTaaaL--------------------KNLD-YegIqsN-GWTdDEhtN
Bacteroi5       ymntEIIAKGaKFTrKsL--------------------EeLD-YnsIqvS-kWTaDaQKN
Bacteroi14      ymntEIIAKGaKFTrKsL--------------------EeLD-YnsIqvS-kWTaDaQKN
Bacteroi13      ylGaEVIAKGsKFsasdf--------------------DSLD-FTaIqlS-dWTnDdhaN
Bacteroi6       ylGtEVIAKGaKFTkydL--------------------ESLD-YTvIqlS-kWTaDahKN
Bacteroi15      ylGtEVIAKGaKFTkRdL--------------------ESLD-YTiIqlS-kWTaDahKN
Bacteroi17      kfGDEVISKGvKFsrKniEanvFPdKNPYRDESnYNVqEeaNllgdliid-nWTSDKKiN
Bacteroi16      kfGDEIISKGvKFnanniEnnLFPaKNPYRDESnYNVPEeaNliSdIild-dWTdDahiN
Bacteroi7       kfGDElISKGmKFnvRnisEnLFPanNPYRDESqYaVPEevNligdVltd-sWsdDadtN
Bacteroi12      vykEllfpKGaKFTqKsL--------------------adLE-YahInpy-kWTTDddKN
Bacteroi4       dlGEEmIpKGRKhTqRgL--------------------KeIEdYThllsg-GWTTDEhtN
Bacteroi11      dlGEEVlpKGKKFTkKmL--------------------QgvEdFahltkg-qWTTDEhtN
Bacteroi3       dlGEEVlpKGKKyTlKmL--------------------hSvDdYThlvsg-tWTTsKdtN
Bacteroi2       dlGEEVlpKGKKyTlKmL--------------------nAvDdFahlvgg-sWTTDsKtN
GOS_109402      ------------------------------------------------------------
Bacteroi10      dlGEDIlpKGKKyTlKmL--------------------nSvEdYThltqg-tWTTDdElN
Bacteroi1       dlGEEVlpKGKKFTlKmL--------------------nSvEdYThltqg-tWTTDdKtN
Chlorobi4       lsGDveIrrGnvFskanLEpl-----------------vSIprlekIdadhGfveaaKlN
Chlorobi3       dkGKtlaAaGaKFdaalisKF-----------------agLsfletVdfSnGiTgtKKvd
Chlorobi5       dkGKvladeGaaFddalLaKF-----------------sSqpflesIdfTlGvTgtKKvd
Chlorobi1       ekGKvlVAeGsvFdesvLaRF-----------------sgLpflesIdfSkGlvesKKvN
Chlorobi2       dkGKvlIAeGsaFddalLaKF-----------------sSMpflesIdfTrGlTasEKvN

Bacteroi9       nLvfkiIKfYylKiNELkiKLKRkKnrlliGDEitsGIIKiAKVlIAKKRKLKVGDKMsG
Bacteroi19      nLvfkiIKfYylKiNELkiKLKRkKnrlliGDEitsGIIKiAKVlIAKKRKLKVGDKMsG
Bacteroi8       ELvktLVaNYntKrNmLiGDfrREKFaleiGDELPtGILKLAKVYvAnKRKLqaGDKMAG
Bacteroi18      lLIqkLImNfirKykqmdaELKRkKFaITiGDELPsGvLqmAKVYIAKKRKiqVGDKlAG
Bacteroi5       ELIkqvIlNYlkKykELdaELrRkKFdlTiGDELPtGIVqmAKVYIAKKRKiqVGDKMAG
Bacteroi14      ELIkqvIlNYlkKykELdaELrRkKFdlTiGDELPtGIVqmAKVYIAKKRKiqVGDKMAG
Bacteroi13      gMIrDLIlNfikKykELdaELKRkKFaITiGDELPAGIIqmAKVYIAKKRKigVGDKMAG
Bacteroi6       DMIrDLIvNYlkKykELdaELKRkKFalTiGDELPsGIIqmAKVYIAKKRKigVGDKMAG
Bacteroi15      DMIrDLVmNYlkKykELdaELKRkKFaITiGDELPAGIIqmAKVYIAKKRKigVGDKMAG
Bacteroi17      EnvlrLVKNYltKrNEtaGKfKRErFTleVGDELPAGIVqLAKVYIAKKRKLKVGDKMAG
Bacteroi16      DLIvkLVKNYtnsrNEisGlfKRdrFTleVGDELPAGIVqLAKVYvAKKRKLKVGDKMAG
Bacteroi7       rqIslvlKNYlnarsEvmGrfKRdrFaleVGDELPAGIVKLAKVYIAKKRKLKVGDKMAG
Bacteroi12      EqIkmLlhNYgirvNEelGayKRdKFaISVGDELPsGIVqmAKVYvAKKRKLKVGDKMAG
Bacteroi4       ELInDLIhNYkiKlNdLqGmLrRdKFTlTVGDELPAGIMKLAKiYIAKKRKLKVGDKMAG
Bacteroi11      aMvnDLIhNYkiKlNdLqGwLrREKFTITVGDELPsGILKLAKVYIAKKRKLKVGDKMAG
Bacteroi3       EMIaDLlhNYkiKeNdLqGsLrREKFTISVGDELPAGIIKLAKVYIAKKRKLKVGDKMAG
Bacteroi2       DLvaDLlhNYkiKlNdLqGnLrRdKFTISVGDELPAGIMKLAKVYIAKKRKLKVGDKMAG
GOS_109402      ----------------------------SVGDELPpGIkKLAKVYIAKKRKLKVGDKMAG
Bacteroi10      sMvaDLIhNYkiKeNdLqGnLrREKFTISVGDELPAGIIKLAKiYIAKKRKLKVGDKMAG
Bacteroi1       tLIaDLlhNYkiKeNdLqGnLrREKFTISVGDELPAGIIKLAKVYIAKKRKLKVGDKMAG
Chlorobi4       gtvkrLIQeYrmrhksLqdEydnEryklnVGDELqpGIeeLAKVYIAqKRKiqVGDKMAG
Chlorobi3       DsvirLVKefrfKlkdLadErenEKykVnVGDELPpGIeeLAKVYIAqKRKiqVGDKMAG
Chlorobi5       EavirLVKefrfKlkdLadErdnEKykVnVGDELPpGIeeLAKVYIAqKRKiqVGDKMAG
Chlorobi1       EnvvrLVKefrfKlkdiadErenEKykInVGDELPpGIeeLAKVYIAqKRKiqVGDKMAG
Chlorobi2       DnvlrLVKefrfKlkdLsdErenEKykInVGDELPpGIeeLAKVYIAqKRKiqVGDKMAG

Bacteroi9       RHGNKGIVARIVkEEDMPyLEDGTsVDlVLNPLGVPSRMNlGQIYETILGWAGeKLGInF
Bacteroi19      RHGNKGIVARIVkEEDMPyLEDGTsVDlVLNPLGVPSRMNlGQIYETILGWAGeKLGInF
Bacteroi8       RHGNKGIVAkvVREEDMPFLEDGTPVDIVLsPLGlPSRMNlGQIYETlLGWAGeKLGrKy
Bacteroi18      RHGNKGIVskvVRtEDMPFLEDGrPVDlVLNPmGVPSRMNlGQIfEaILGaAGRKLGVKF
Bacteroi5       RHGNKGIVskIVRQEDMPFLEDGTPVDIcLNPLGVPSRMNlGQIfEaVLGWAGReLdVKF
Bacteroi14      RHGNKGIVskIVRQEDMPFLEDGTPVDIcLNPLGVPSRMNlGQIfEaVLGWAGReLdVKF
Bacteroi13      RHGNKGIVsRvVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIfEaVLGrAGKnLGVKF
Bacteroi6       RHGNKGIVsRvVRQEDMPFLaDGTPVDIVLNPLGVPSRMNIGQIfEaVLGrAGKeLGVKF
Bacteroi15      RHGNKGIVsRvVRQEDMPFLaDGTPVDIVLNPLGVPSRMNIGQIfEaVLGrAGKeLGVKF
Bacteroi17      RHGNKGvVARIVRdEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETlLGlAGKKLGrKy
Bacteroi16      RHGNKGIVARIVRdEDMPFLEDGTPmDIVLNPLGVPSRMNIGQIfETVLaWAGqvLGkKy
Bacteroi7       RHGNKGvVARIVRdEDMPFLEDGTPVnIVLNPLGVPSRMNIGQIYETILaWAGlKLGrry
Bacteroi12      RHGNKGIVARIVRdEDMPFLEDGTPVDIVLNPLGVPSRMNlGQIYETVLaWAGKeLGVKF
Bacteroi4       RHGNKGIVARIVRdEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLGWAGqKLGkKF
Bacteroi11      RHGNKGIVAkIVRhEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLGWAGqKLnkKF
Bacteroi3       RHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLGWAGqKLGktF
Bacteroi2       RHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLGWAGqKLGkKF
GOS_109402      RHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLGWAGKeLGrKF
Bacteroi10      RHGNKGIVARIVREEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLGWAGqKLGrKF
Bacteroi1       RHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLGWAGqKLGrty
Chlorobi4       RHGNKGvVgkvVpvEDMPFmaDGTPVDIVLNPLGVPSRMNIGQlfETsLGWAasKLGVKF
Chlorobi3       RHGNKGvVgkIlpiEDMPFmaDGkPVDIVLNPLGVPSRMNIGQlYETsLGWAaKtLGVKF
Chlorobi5       RHGNKGvVgkIlpiEDMPFmaDGTPVDIVLNPLGVPSRMNIGQlYETsLGWAaKKLGVKF
Chlorobi1       RHGNKGvVgkIlsiEDMPFmEDGTPVDIVLNPLGVPSRMNIGQlYETsLGWAaKKLGVKF
Chlorobi2       RHGNKGvVgkIlpiEDMPFmaDGTPVDIVLNPLGVPSRMNIGQlYETsLGWAaKKLGVKF

Bacteroi9       sTPIFDGAsIeEISkyTDiAnLPsFGnTYLfDGeTGEkFDQPvTVGVIYMLKLnHMVDDK
Bacteroi19      sTPIFDGAsIeEISkyTDiAnLPsFGnTYLfDGeTGEkFDQPvTVGVIYMLKLnHMVDDK
Bacteroi8       ATPIFDGATIedVSkelaEAnLPaFGKadLYDGlTGEkFDQqiTVGVIYMLKLdHlVDDK
Bacteroi18      ATPIFDGAkLsdlkEwTDKAGLPnlcsTYiYDGeTGEkFDQPATVGItYfLKLGHMVeDK
Bacteroi5       ATPIFDGATLDdlNEwTDKAGiPRYGKsYLYDGgTGERFDQPATVGVtYfLKLGHMVDDK
Bacteroi14      ATPIFDGATLDdlNEwTDKAGiPRYGKsYLYDGgTGERFDQPATVGVtYfLKLGHMVDDK
Bacteroi13      ATPIFDGATLDdlNEwTDKAGLPRYcKTYLcDGgTGERFDQPATVGVtYMLKLGHMVeDK
Bacteroi6       ATPIFDGATLDdlDEwTDKAGLPRYcKTYLYDGgTGdqFDQPATVGVtYMLKLGHMVeDK
Bacteroi15      ATPIFDGAsMDdlNEwTDKAGLPRYcKTYLcDGgTGERFDQPATVGVtYMLKLGHMVeDK
Bacteroi17      ATPIFDGAseeEVinelrdAGLPtiGRTkLvDGlsGnpFDQPvTVGVIYMmKLGHlVDDK
Bacteroi16      ATPIFDGAsMeEVatelelAGvPaYGRTYLYDGlsGskFDQPvTVGIaYMLKLGHlVDDK
Bacteroi7       ATPIFDGATeaEVaaelkEAGLPdwGRTYLYnGlTGEqFDQPvTVGlmYMmKLGHlVDDK
Bacteroi12      ATPIFDGAkhDEVeEwiaKAGvPasGRTYLhnGlTGEkFDQPtTVGIIYMLKLGHMVDDK
Bacteroi4       ATPIFDGAsLeqItEyTnEAGvPaFGhTYLYDGgTGERFDQkATVGVIYMiKLGHMiDDK
Bacteroi11      ATPIFDGATLDqINEfTDEAGiPRFGhTYLYDGgTGERFhQrATVGVIYMLKLGHMVDDK
Bacteroi3       ATPIFDGATLDqINayTDEAGiPRFGhTYLYDGgTGdRFDQPATVGVIYMLKLGHMVDDK
Bacteroi2       ATPIFDGATLDEINElTDKgeiPRFGhTYLYDGgTGERFhQPATVGVIYMLKLGHMVDDK
GOS_109402      sTPIFDGATLDEINQlTDEAGvPRFGhTYLYDGgTGEkFDQaATVGVIYMLKLGHMVDDK
Bacteroi10      ATPIFDGATLDqINElTDEAGiPRFGhThLYDGgTGdRFDQPATVGVIYMLKLGHMVDDK
Bacteroi1       ATPIFDGATLDqINalTDEAGiPRFGhTYLYDGgTGdRFDQPATVGVIYMLKLGHMVDDK
Chlorobi4       ATPIFDGATyaEVqQklkdAGLPvhGKikLhDGrTGEpFDdevTVGyIYMmKLsHlVDDK
Chlorobi3       kTPIFnGATyeEVqaeleRAGLPahGKvsLYDGrTGERFDdevTVGyIYMLKLsHlVDDK
Chlorobi5       kTPIFnGATyeEVqaeleRAGLPmhGKvrLYDGrTGEqFDdevTVGyIYMLKLsHlVDDK
Chlorobi1       kTPIFnGATyeEVqneleRAGLPmhGKvsLfDGrTGEkFDdevTVGyIYMLKLsHlVDDK
Chlorobi2       kTPIFnGATyeEVqQqleKAGLPahGKvsLfDGrTGERFDdevTVGyIYMLKLsHlVDDK

Bacteroi9       MHARSIGPYSLITQQPLGGKskFGGQRlGEMEVWALEAFGAAnILrEILTVKSDDVkGRt
Bacteroi19      MHARSIGPYSLITQQPLGGKskFGGQRlGEMEVWALEAFGAAnILrEILTVKSDDVkGRt
Bacteroi8       MHARSIGPYSLITQQPLGGrsQFGGQRFGEMEVWALEAFGAAHILQEmLTiKSDDVVGRs
Bacteroi18      MHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAiEAFGAsHVLQEILTiKSDDVVGRs
Bacteroi5       MHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAHVLQEILTiKSDDVVGRs
Bacteroi14      MHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAHVLQEILTiKSDDVVGRs
Bacteroi13      MHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEgFGAsHILQEILTiKSDDVVGRs
Bacteroi6       MHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAiEAFGAAHVLQEILTiKSDDVVGRs
Bacteroi15      MHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAHILQEILTiKSDDVVGRs
Bacteroi17      MHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAnILQEILTVKSDDVVGRA
Bacteroi16      MHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAsHVLQEILTVKSDDVIGRA
Bacteroi7       MHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAsHILQEILTVKSDDVVGRA
Bacteroi12      MHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGAAnILQEILTVKSDDVIGRA
Bacteroi4       MHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAyGAsstLrEILTVKSDDVIGRA
Bacteroi11      MHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAyGAsstLrEILTVKSDDVIGRA
Bacteroi3       MHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAyGAsstLrEILTVKSDDVIGRA
Bacteroi2       MHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAyGAsatLrEILTVKSDDVIGRA
GOS_109402      MHsRSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAyGAssaLQEILTiKSDDVIGRA
Bacteroi10      MHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAyGAsstLrEILTVKSDDVIGRA
Bacteroi1       MHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAyGAsatLrEILTVKSDDVIGRA
Chlorobi4       iHARStGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAyGAsHILQEVLTVKSDDVsGRt
Chlorobi3       iHARStGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAyGAAnILrEmLTVKSDDVIGRn
Chlorobi5       iHARStGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAyGAAnILrEmLTVKSDDVVGRn
Chlorobi1       iHARStGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAyGAAnILrEmLTVKSDDVIGRn
Chlorobi2       iHARStGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAyGAAnILrEmLTVKSDDVIGRn

Bacteroi9       KTYEAIVKrEtiPnPGIPESFhVLLkELkGLGLslKLEvikkKEKKNQKIKVRIEIKEKD
Bacteroi19      KTYEAIVKrEtiPnPGIPESFhVLLkELkGLGLslKLEvikkKEKKNQKIKVRIEIKEKD
Bacteroi8       KaYEAIVKGtsfPkPGIPESFNVLiHELRGLGLEItLk----------------------
Bacteroi18      KaYEAIVKGEpMPtPGIPESlNVLLHELRGLGLsIKLd----------------------
Bacteroi5       KaYEAIVKGdpMPQPGIPESlNVLLHELRGLGLsftLd----------------------
Bacteroi14      KaYEAIVKGdpMPQPGIPESlNVLLHELRGLGLsftLd----------------------
Bacteroi13      KaYEAIVKGEpMPQPGIPESlNVLLHELRGLGLsInLE----------------------
Bacteroi6       KaYEAIVKGEpMPtPGIPESlNVLLHELRGLcLsItLE----------------------
Bacteroi15      KaYEAIVKGEpMPtPGIPESlNVLLHELRGLGLsInLE----------------------
Bacteroi17      KTYEcIVKGENlPrPnIPESFNVLvHELRGLaLEItLh----------------------
Bacteroi16      KaYEAIVKGENlPkPnIPESFNVLvHELRGLaLEItLd----------------------
Bacteroi7       KaYEAIVKGENlPkPnIPESFNVLvHELRGLaLEItLd----------------------
Bacteroi12      KTYEAIVKGENlPtPGVPESFNVLvHELRGLGLdItLd----------------------
Bacteroi4       rTYEAIVhGdtMPEPGlPESFNVLmHELkGLGLdIRLED---------------------
Bacteroi11      KTYEAIVKGEtMPEPGlPESFNVLmHELkGLGLdIRLEE---------------------
Bacteroi3       KTYEAIVKGEpMPEPGlPESFNVLmHELkGLGLdlRLED---------------------
Bacteroi2       KTYEsIVKGEsMPEPGlPESFNVLmHELkGLGLdIRLEE---------------------
GOS_109402      KaYEsIVKGENlPEaGlPESFNVLmHELkGLGLdIRLEEK--------------------
Bacteroi10      KTYEsIVKGEpMPEPGlrESFNVLmHELkGLGLdIRLEE---------------------
Bacteroi1       KTYEsIVKGEpMPEPGlPESFNVLmHELkGLGLdIRLEEK--------------------
Chlorobi4       rTYEAIVKGqNlPDPnVPESFNVLirELqGLGLEIRidDKVP------------------
Chlorobi3       KTYEAIVKGqNlPDPGIPESFNVLirELqGLGLEVRidDRVP------------------
Chlorobi5       KTYEAIVKGqNlPEPGIPESFNVLirELqGLGLEIRidDRVP------------------
Chlorobi1       KTYEAIVKGqNlPEPGtPESFNVLvrELqGLGLEIRidERVP------------------
Chlorobi2       KTYEAIVKGqNlPEPGIPESFNVLirELqGLGLEIRidDRVP

Merci
ETalla09
29 Nov 2009 15:34
Maître de jeu
Bonjour,

C'est trop vague... Soyez plus explicite!!! Qu'est ce que vous ne comprenez pas dans votre alignement multiple?

ET
famar
29 Nov 2009 18:51
Contribution: Pas assez limpide
> Il n'y a aucun acide aminé qui correspond on a:
>
> RÉSULTATS BRUTS:
>
> Bacteroi9 -MkKiiKIRrfkfpfTKeKtINFASVrNkisYPDFLDIQiKSFtnFFcInytyknisNkG
> Bacteroi19 -MkKiiKIRrfkfpfTKeKtINFASVrNkisYPDFLDIQiKSFtnFFcInytyknisNkG
> Bacteroi8 ---------------mKSsRIsFAatqsvsEYPDFLeIQLKSFnDFFQLgTPpEKRiDEG
> Bacteroi18 ------------MaldnkpRVNFASVKNpypYPDFLDvQLKSFrDFlQLDTPpEeRkNdG
> Bacteroi5 -----------MsstaEnQRVNFASIKNqfpYPDFLevQLKSFQDFlQLDTPpEKRkkEG
> Bacteroi14 -----------MsstaEnQRVNFASIKNqfpYPDFLevQLKSFQDFlQLDTPpEKRkkEG
> Bacteroi13 -----------MssnTvnQRVNFAStKNplEYPDFLevQLKSFQDFlQLDTPpEKRkkEG
> Bacteroi6 -----------MsseTQnQRINFASIKNpmqYPDFLevQLKSFQDFlQLDTPpEKRkNdG
> Bacteroi15 -----------MssnTEnQRVNFASIKNpmkYPDFLevQLKSFQDFlQLDTPpEKRkNdG
> Bacteroi17 ----------MatnnTQnlRksFAktrstvEYPDFLDIQvRSFkDFFQIDTPaEnRfkEG
> Bacteroi16 -----------MaiknQTERksFsSIKvvkDYPDFLDIQLqSFkDFFQLDTPaEKRradG
> Bacteroi7 ----------MatinpKTpRkNFsrInqiiDYPDlLgIQvqSFrDFFsLDTsvEdRsgEG
> Bacteroi12 ------------MankvdQRVNFArsKhiiDYPDFLDvQLqSFreFFQIETtsDnRhtEG
> Bacteroi4 ------------MltnQSsRINFAStKhvpDYPDFLDIQvKSFQDFFQMETksDaRsgEG
> Bacteroi11 ------------MianQTERLNFAStKNipqYPDFLDIQvKSFkDFFQLETksDeRgNEG
> Bacteroi3 -----------MMlaTnTERINFstVttkaDYPDlLDIQiKSFQDFFQLETksDKRevEG
> Bacteroi2 ------------MftkQTERIsFASaKNipEYPDFLDIQiqSFQDFFQLETksDqRaNEG
> GOS_109402 ------------------------------------------------------------
>
> A quoi ca correspond? Il n'y a aucun acide aminé en commun?
> Pourtant c'est cet alignement qui nous a permis de construire l'arbre
> et il est cohérent.
>
> +-----------Bacteroi12_Pedobacter_sp._BAL39/Bacteroidetes/ref_ZP_01885025.1
> |
> | +---------GOS_1094020_Traduction_1-756_sens_indirect
> | |
> | | +--Bacteroi10_Croceibacter_atlanticus_HTCC2559/Bacteroidetes/ref_ZP
> | | |
> | +----------+
> +-++--Bacteroi3_Flavobacteria_bacterium_BBFL7/Bacteroidetes/ref_ZP_012
> | | | | ++
> | | | | |
> +--+ | +-+
> +-Bacteroi1_Dokdonia_donghaensis_MED134/Bacteroidetes/ref_ZP_01050
> | | | |
> | | | |
> +---Bacteroi2_Robiginitalea_biformata_HTCC2501/Bacteroidetes/ref_YP
> | | +---+ +-+
> | | | | |
> +----------Bacteroi4_Capnocytophaga/Bacteroidetes/ref_ZP_04057344.1_gi_2284
> | | | | +--+
> | | | |
> +---Bacteroi11_Flavobacteria_bacterium_BAL38/Bacteroidetes/ref_ZP_01
> | | | |
> | | | | +Bacteroi9_Candidatus_Sulcia_muelleri_GWSS/Bacteroidetes/ref_YP_0
> | +--------+ +-------------------------------------+
> | | +Bacteroi19_Candidatus_Sulcia_muelleri_GWSS/Bacteroidetes/ref_YP
> | |
> | | +Bacteroi5_Parabacteroides_distasonis_ATCC_8503/Bacteroidetes/ref
> | | +-------+
> | | | +Bacteroi14_Parabacteroides_distasonis_ATCC_8503/Bacteroidetes/re
> | | |
> | +--------------+
> +--------------------Bacteroi18_Prevotella/Bacteroidetes/ref_ZP_05858236.1_gi_2605927
> | | |
> | +--+
> | | +----Bacteroi6_Bacteroides/Bacteroidetes/ref_ZP_03209967.1_gi_1982774
> | +-+
> | | +--Bacteroi13_Bacteroides_fragilis_YCH46/Bacteroidetes/ref_YP_21359
> | +--+
> | +-Bacteroi15_Bacteroides/Bacteroidetes/ref_ZP_04542147.1_gi_212695
> |
> |
> +---------------Chlorobi4_Chloroherpeton/Chlorobi/ref_YP_001996089.1_gi_19321489
> | |
> | +----------------------------------+
> +Chlorobi2_Chlorobium_ferrooxidans_DSM_13031/Chlorobi/ref_ZP_0138
> | | | |
> | | | |
> +----Chlorobi1_Chlorobium_limicola_DSM_245/Chlorobi/ref_YP_001942274.
> | | +-----+++
> | | ||+--Chlorobi5_Pelodictyon_luteolum_DSM_273/Chlorobi/ref_YP_375847.1
> +---+ ++
> | |
> | +--Chlorobi3_Prosthecochloris_vibrioformis_DSM_265/Chlorobi/ref_YP
> |
> |
> +----------------------------Bacteroi8_Candidatus_Amoebophilus_asiaticus_5a2/Bacteroidetes/re
> +---+
> |
> +-----------Bacteroi16_Algoriphagus_sp._PR1/Bacteroidetes/ref_ZP_01719499.1
> +--+
> |
> +--------------Bacteroi17_Cytophaga_hutchinsonii_ATCC_33406/Bacteroidetes/ref_Y
> +---+
> +---------Bacteroi7_Dyadobacter/Bacteroidetes/ref_YP_003087824.1_gi_25503
>
> Que doit-on faire?
ETalla09
29 Nov 2009 19:44
Maître de jeu
Pas de panique!! Votre ORF est simplement plus court que ses homologues. De ce fait, l\'alignement multiple entre votre sequence et les homologues est bel et bien realisee dans la partie C-ter des proteines ... Il n\'y a donc rien d\'incoherent à cela... D\'ailleurs dans le processus Align-Phylogenie, le programme Gblocks filtre votre alignement multiple pour ne retenir ques les positions informatives et dans votre cas, ce sera probablement dans la partie C-ter des proteines ...

ET