LB-MN
3 Nov 2014 15:16
Contribution: Pertinent |
Bonjour,
Il y a un petit problème : suite à la sélection des séquences des groupes
d'étude et externes dans Tax Report, nous ne pouvons pas les chercher au format
fasta. Cela nous affiche "page web inaccessible".
Y a-t'il un moyen de contourner ce problème svp ?
A cause de cela nous ne pouvons pas continuer l'étude de notre deuxième
séquence à rendre pour vendredi prochain ...
Nous vous remercions,
LB-MN
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P_Hingamp14
3 Nov 2014 19:32
Game master |
Je viens de faire un test, et le Tax Report renvoie bien les séquences au format FASTA. Et votre fiche d'annotation TO30S_4617020.44 présente bien un rapport taxonomique d'apparence normal. Un problème passager du serveur peut-être?
Voici un jeu de séquences sélectionnées en cochant au hasard dans un Tax Report produit à l'instant avec vos hits BLAST:
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>Bac_Cya_Pro_1 [Bacteria Cyanobacteria Prochlorales] E-value=8e-179 Bacteria;Cyanobacteria;Prochlorales;Prochlorococcaceae;Prochlorococcus; gi|499445109|ref|WP_011132573.1| membrane protein [Prochlorococcus marinus]
MLIEFFNQKNNSFKKVNLILASFFFSLMTVCVKKIDTRIPIYELVFFRSLLSLFITSMIINKKNLNPWGKNKPLLILRGI
LGTIALVCIFYAIKNMPLNISTVIQYTYPIFISIFAGILINEKINKNLIIASITGWLGILIILNPYQLSSLNIELDKFTV
LIAFLGAISTALAYITVKKLSLTEDIFIIIKYFPLISVITLSPIVFFNWVTPNINDLIWILGIGMFTQAGQTFLTIGLKK
LPTSEAARINYLQVLFGSLWGILFFNELININFIVGAVLVLLGTIISTSKKLKKI
>Bac_Cya_Pro_2 [Bacteria Cyanobacteria Prochlorales] E-value=2e-168 Bacteria;Cyanobacteria;Prochlorales;Prochlorococcaceae;Prochlorococcus; gi|500144328|ref|WP_011820331.1| membrane protein [Prochlorococcus marinus]
MLKDFLNQNNKSFNKINLIFASFFFSLMTLCVKKIDNGIPIYELVFFRSLFSLLITSLIINKRKVNPWGKNKPLLILRGL
LGTIALVCIFYAIRNMPLNISTVIQYTYPIFISIFAGILINEKISKNIIIASLAGWFGILIILNPYQLSSLNIEIDKISV
LIAFLGAISTSLAYITVKKLSLSEDIFVIIKYFPLISVITLSPIVFFNWVTPNINDLIWIIGIGMFTQAGQTFLTIGLKK
LPTSEAATINYLQVLFGSIWGIIFFNELININFIIGSLLVLLGTIISTSKIMKKI
>Bac_Cya_Pro_3 [Bacteria Cyanobacteria Prochlorales] E-value=1e-146 Bacteria;Cyanobacteria;Prochlorales;Prochlorococcaceae;Prochlorococcus; gi|647642382|ref|WP_025914534.1| membrane protein [Prochlorococcus sp. scB245a_520K10]
MINIAELEKKFNSLNKFNLVFASFFFSLMTLCVKNIDKRIPIYELVLFRSFLSLIITSSIINLKNINPWGKNRPLLILRG
VLGTLALICIFYAIRNMPLSISTVIQYTYPIFISIFAGIFINEKITRNIIFALIIGWIGILVILNPSQLSNINVEIEKVS
ISIAFLGAICTALAYVTVKKLSFTEDVYVIIEYFPLVSFITLLPIVLINWVTPNWNELVWIIGIGLFTQLGQTFLTIGLK
NLPASEASTINYLQVLFGSIWGILFFNEIININFLLGASLVLLGTIISTTQILKST
>Bac_Cya_Pro_4 [Bacteria Cyanobacteria Prochlorales] E-value=3e-143 Bacteria;Cyanobacteria;Prochlorales;Prochlorococcaceae;Prochlorococcus; gi|647694779|ref|WP_025954603.1| membrane protein [Prochlorococcus sp. scB243_498C16]
MINITELEKKFNSLNKFNLVFASFFFSLMTLCVKNIDKRIPIYELVLFRSLLSLIITLFIINQKNINPWGNNRPLLILRG
VLGTLALVCIFYAIRNMPLSISTVIQYTYPIFISIFAGIFIDEKLTRNIILALIIGWIGILVILNPSQLSNINVEIENVS
ISIAFLGAICTALAYVTVKKLSFTEDVYVIIEYFPLVSFIALLPIVLMNWVTPTWNELVWIIGIGLFTQLGQTFLTVGLK
NFPASEASTINYLQVLFGSIWGILFFSEVININFLLGASLVLLGTIISTTKIIKRT
>Bac_Cya_Pro_5 [Bacteria Cyanobacteria Prochlorales] E-value=4e-76 Bacteria;Cyanobacteria;Prochlorales;Prochlorococcaceae;Prochlorococcus; gi|499437444|ref|WP_011124908.1| membrane protein [Prochlorococcus marinus]
MNWTLWNKQKKYTHGFITLVGSALAFSLMTVCIKHLRGRIPVAELVFFRSVFSLLTTRLMMRNAGVYPWGINKRLLIARG
LIGTSALFCVFKAIDSLPLGAATIIQYTYPTFIAFLAWLILNEELRKRIFLAIILGWLGVQAVVHTLWENSSHQQLAFPS
VIVALSGAMLTALAYVIVRKLSKQEHQLVIVFYFPLVSIPITLPFLIHQSVLPIGTEWAWLIGIGIFTQLGQLLITNGLS
LLPAGYAGSISYTQVIFATLWGWLIFSEPLTFYILVGATCVLLATLISLSDLPNF
>Bac_Cya_Chr_1 [Bacteria Cyanobacteria Chroococcales] E-value=2e-71 Bacteria;Cyanobacteria;Chroococcales;Synechococcus; gi|670927387|gb|AII43349.1| hypothetical protein KR100_08240 [Synechococcus sp. KORDI-100]
MRSFCELTPLRPVTDASGQETAHGVRSLILSSLAFSLMTVCVKQLDGRLPVPEIVMSRALISIGLTALGLVRAGISPWGT
HLGWLLARGICGSLALLFFFEAITTLPLASATVLQYTYPTFTAIAAALVLGEQLRRSIAVAVLLGWIGITLVAQPEWLSG
GIEELPATAVLIALGGALFTALAYVCVRHLSSREHPLVIILYFPILSLPLTLPMVIRDGVMPQGVEWLWLLCVGVLTQLG
QIWVTHGLSLMPAAQATSINYIQVVFAALWGYLWFSEGLTSWVVIGGVMVLASTLVSLQARNPS
>Bac_Pro_Gam_1 [Bacteria Proteobacteria Gammaproteobacteria] E-value=2e-54 Bacteria;Proteobacteria;Gammaproteobacteria;Vibrionales;Vibrionaceae;Vibrio; gi|490552182|ref|WP_004417292.1| membrane protein [Vibrio orientalis]
MILSALGFALMSACVKYVSTYGIPVFEIVAARALVSLIISYLDVKRKRISVWGNNRPLLLVRGTVGTLALMCVYYSVTTL
PLAEATILQYVHPVFTALLGVLFLKERVQSSTMVCIAFCLVGLMVMVQPSLSSSVAYDLPLFSVMTALIGAMGSSIAYVI
VRKLSQTEDSSVIIFYFPLVALPTSVFLMWDEFIWPSLYLTLMLVLVGVFTQVGQYGLTKAMQTQAAGKASAYSYIQIVF
SALLGVWIFNEVPSFWTYLGGSLIVTGALINVFGSKMLKPFKRAE
>Bac_Pro_Gam_2 [Bacteria Proteobacteria Gammaproteobacteria] E-value=4e-18 Bacteria;Proteobacteria;Gammaproteobacteria;Oceanospirillales;Halomonadaceae;Halomonas; gi|653087154|ref|WP_027337530.1| S-adenosylmethionine uptake transporter [Halomonas sp. HL-48]
MTTSLKGILCMCLGVLFLALGDAVSKWLGEVHSPLQIIFFRTLISLPLIALLAHFAGGLRKLRTRRPGVHLLRGLIYTAT
MVCFVLGLTLLPLAEATAIAFVAPLFVTLLSVPLLGERIDPPVLLASLVGFVGVLIVVRPNGDAFQIGALALVGAALFYA
LMMITARRYGAREHLWAMLFYMTCVPLVVTAATLPWVWQTPQPWHWVGFLASGVLGVAATAFITLAFRFTPAAIAAPFDY
TAMLWAVLLGWWFWGELPDLWVWVGSALIMASGLAIAYHDRRTTLKRRPTA
>Bac_Fus_Fus_1 [Bacteria Fusobacteria Fusobacteriales] E-value=5e-21 Bacteria;Fusobacteria;Fusobacteriales;Fusobacteriaceae;Fusobacterium; gi|552904543|ref|WP_023036138.1| S-adenosylmethionine uptake transporter [Fusobacterium nucleatum]
MVISNKTRGVFWMLVSVLGFTFMGIAVKYLPRIPTYEKVFFRNSVSFITSAYILYRQKESIKVAKENIPFVFGRSFFGFV
GMVANFYALENLTMAEANMLNKLSPVFVTICACIFLKEKVDNKQIIGIILMLMAVVFVIKPSFSPEVIPSLVGLFSAILA
GFSYTIIRYLHGKVKSEINVFYFSLLSVVCTFPLMMMNFIKPNLFEVFMLIVGIGVSAAMGQFGLTYAYTFAPASEVSIY
NYVIIITSMLMDYILFSTIPDLFSFIGGFIIITTAIYLYLHNKKKEE
>Bac_Omn_Can_1 [Bacteria Omnitrophica Candidatus Omnitrophus] E-value=3e-29 Bacteria;Omnitrophica;Candidatus Omnitrophus; gi|551124841|ref|WP_022807888.1| hypothetical protein [Candidatus Omnitrophus fodinae]
MTQESGLSKPHQRLTGILHMTGASLAFALMVLCVKWAVRGLPVFEVIFFRSVTGTLLIGMLILRKKVSFWGKDHGLLLLR
GISGFTALALHFFTISKLPLGLAVMLNFTAPVFAAVFAVFFLKEKPGFFLWTMILMSFAGVFFITVPSGMSLHTGGPKIL
FIFLGLLSGLFAAIAYVSIRGIKHHESPLTIIFYFTFISMVGSAFFLPAGMRWPEPLEWLALLGVAVGSFFGQLGMTVAF
RKAPASLVSPFSYLTPAFAFLFGFIFWEETITAHTIIGTVLIFLAGSLVSLREAVYE
>Euk_Met_Cho_1 [Eukaryota Metazoa Chordata] E-value=3e-17 Eukaryota;Metazoa;Chordata;Craniata;Vertebrata;Euteleostomi;Actinopterygii;Neopterygii;Teleostei;Euteleostei;Neoteleostei;Acanthomorpha;Acanthopterygii;Percomorpha;Pleuronectiformes;Soleoidei;Cynoglossidae;Cynoglossinae;Cynoglossus; gi|657752982|ref|XP_008311974.1| PREDICTED: solute carrier family 35 member G1 isoform X1 [Cynoglossus semilaevis]
MGDCNTATHERTPSVRDITVVFHKVDCHEQNQNSDHEYDECNDAAEHLPLRGDCRVSHGYGFGEDDDAACDDAPRKEEVT
GRHNSLEGGKKQTPLCPPAFCVRSEPACEEGTGEQQVEEKPNGCPGLGLFYAFLSTVLFSVIALLVKTIQELHAIEISGL
RCFFQMLFVMPLLIYHKTGFLGPRDKRIFLVLRGFTGSNAMILLYYAVKQMPLADATVIMFSNPVFTSLLAWIFLKEKCT
IWDCVFTVFTLTGVILIARPPFIFGENLYGIEDNYTDHIKGAIAAFVGAIAVAFTFVVLRKMGKSVHYYLSVWYYAVIGL
IECVITVSILGEWRIPHCGRDRWIMLLIAILGIAGQTFLTKALQIEKAGPVSLMRTVDVVLAFILQFIFFNRAPTWWSLG
GALCIVLSTSGVAVRKWYTSTQRSRTPVTTEQN
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