Bonjour,
qq soucis avec le re enracinement ERROR: Outgroup's LCA is tree's root - cannot reroot. Try -l.
Arbre phyML avec 5. Tree Rendering Set. donc pas de valeur des noeud
,---+ BPGAAM1 Bacteria Proteobacteria Gammaproteobacteria Alteromonada
|
| ,--+ BPGPPP1 Bacteria Proteobacteria Gammaproteobacteria Pseudomonada
| ,-+
|,+ '-+ BPGPPS1 Bacteria Proteobacteria Gammaproteobacteria Pseudomonada
,---+||
| ||'---+ BPG1 Bacteria Proteobacteria Gammaproteobacteria E-value2e-110
| ,+
| ||,--+ BPGOHC1 Bacteria Proteobacteria Gammaproteobacteria Oceanospiril
| |'+
| | '-+ BPGOHH1 Bacteria Proteobacteria Gammaproteobacteria Oceanospiril
| '
| | ,---+ BPGEED1 Bacteria Proteobacteria Gammaproteobacteria Enterobacter
| | |
| | | , BPGVVS2 Bacteria Proteobacteria Gammaproteobacteria Vibrionales
| '-+,---+
| || ' BPGVVS1 Bacteria Proteobacteria Gammaproteobacteria Vibrionales
,-+ ||
| | '+ ,--+ BPGAAC1 Bacteria Proteobacteria Gammaproteobacteria Alteromonada
| | | ,+
| | | |'---+ BPGAAA1 Bacteria Proteobacteria Gammaproteobacteria Aeromonadale
| | '-+
| | | ,--+ BPGCCR1 Bacteria Proteobacteria Gammaproteobacteria Chromatiales
| | | |
| | '-+ ,-+ BPGPPR1 Bacteria Proteobacteria Gammaproteobacteria Pasteurellal
| | '---+
| | '-+ BPGPPP2 Bacteria Proteobacteria Gammaproteobacteria Pasteurellal
| |
| | ,+ TO82D 6183060 Traduction 1-966 sens indirect
| '---------+
=+ ' BPGS1 Bacteria Proteobacteria Gammaproteobacteria SAR86 cluster
|
| ,-----------+ BCOL1 Bacteria Cyanobacteria Oscillatoriales Leptolyngbya E-valu
| |
| | ,-------+ BPPPe1 Bacteria Planctomycetes Planctomycetacia Planctomycetales
| | |
| | | ,----------------+ BSSSSS1 Bacteria Synergistetes Synergistia Synergistales Synergi
| | | |
| | | ,-,--------+ BA1 Bacteria Armatimonadetes E-value3e-64 Bacteria Armatimonade
| | | | '
| | | , '----------+ BCCCD1 Bacteria Chrysiogenetes Chrysiogenales Chrysiogenaceae De
| | | |
| | | | ,-------+ BFCTTS1 Bacteria Firmicutes Clostridia Thermoanaerobacterales Th
'-+ | '-+
| | | '----------+ BDDD1 Bacteria Deferribacteres Deferribacterales Deferribacterac
| | |
| | | ,------------+ BCCCC1 Bacteria Chitinivibrionia Chitinivibrionales Chitinivibri
| | ,+ ,-+
| | ||,+ '-----------+ BSSSS1 Bacteria Spirochaetes Spirochaetales Spirochaetaceae Spir
| | ||||
| | |||'-----------+ BGGGG1 Bacteria Gemmatimonadetes Gemmatimonadales Gemmatimonadac
| | |||
| | ||| ,-----------+ BPDDDD2 Bacteria Proteobacteria Deltaproteobacteria Desulfovibri
| | ||| |
| | ||| | ,------+ BCCCC2 Bacteria Chloroflexi Chloroflexales Chloroflexaceae Chlor
'-+ |'+ | |
| | | | | , BPBMMM1 Bacteria Proteobacteria Betaproteobacteria Methylophilal
| | | | | ,-+
| | | | | | '-+ BPBMu1 Bacteria Proteobacteria Betaproteobacteria Methylophilale
| | | | | ,--+
| | | | | | | ,-----+ BPBNNK1 Bacteria Proteobacteria Betaproteobacteria Neisseriales
| | '-+ | | '-+
| | ,--+ ,---+ '-----+ BPB1 Bacteria Proteobacteria Betaproteobacteria E-value3e-56 Ba
| | | | | |
| | | | | '-----+ BPGMMM1 Bacteria Proteobacteria Gammaproteobacteria Methylococca
|,+ | | ,-+
||| | | | | ,-----+ BPAM1 Bacteria Proteobacteria Alphaproteobacteria Micavibrio E-v
||| | | | | ,--+
||| | | | '--+ '-----+ BPARuE1 Bacteria Proteobacteria Alphaproteobacteria Rhodospirill
||| | '--+ |
||| ' | '-----+ BPARRR1 Bacteria Proteobacteria Alphaproteobacteria Rickettsiale
||| | |
||| | | ,-+ BPZMMM1 Bacteria Proteobacteria Zetaproteobacteria Mariprofundal
||| | '----------+
||| | '---+ BPZ1 Bacteria Proteobacteria Zetaproteobacteria E-value7e-57 Ba
||| |
'+| | ,--------+ BE1 Bacteria Elusimicrobia E-value8e-58 Bacteria Elusimicrobia
|| | |
|| '---+ , BPES2 Bacteria Proteobacteria Epsilonproteobacteria Sulfurovum E
|| '--------+
|| ' BPES1 Bacteria Proteobacteria Epsilonproteobacteria Sulfurovum E
||
|'--------+ BA2 Bacteria Acidobacteria E-value2e-59 Bacteria Acidobacteria
|
| ,--------+ BTTTT1 Bacteria Thermodesulfobacteria Thermodesulfobacteriales T
| ,-+
| | '-------+ BPDSSD1 Bacteria Proteobacteria Deltaproteobacteria Syntrophobac
'-+
| ,-----+ BN1 Bacteria Nitrospirae E-value6e-67 Bacteria Nitrospirae gi 9
'--+
'--------+ BPDDDD1 Bacteria Proteobacteria Deltaproteobacteria Desulfobacte
|-----|-----|-----|-----|-----|---
0 0.25 0.5 0.75 1 1.25
substitutions/site
Format Tree in Newick format avec Arbe phml . Phylogeny Set. Donc pas re enracine mais impossible ERROR: Outgroup's LCA is tree's root - cannot reroot. Try -l.
(((((((BA2_Bacteria_Acidobacteria_E-value=2e-59_Bacteria_Acidobacteria:0.391091,
(((BTTTT1_Bacteria_Thermodesulfobacteria_Thermodesulfobacteriales_T:0.370200,
BPDSSD1_Bacteria_Proteobacteria_Deltaproteobacteria_Syntrophobac:0.327450)
0.120000:0.077818,
(BN1_Bacteria_Nitrospirae_E-value=6e-67_Bacteria_Nitrospirae_gi_9:0.249962,
BPDDDD1_Bacteria_Proteobacteria_Deltaproteobacteria_Desulfobacte:0.383642)
0.585000:0.120327)0.478000:0.101668,
((((BPGAAM1_Bacteria_Proteobacteria_Gammaproteobacteria_Alteromonada:0.175911,
((((BPGPPP1_Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonada:0.104437,
BPGPPS1_Bacteria_Proteobacteria_Gammaproteobacteria_Pseudomonada:0.064711)
0.922000:0.070793,
BPG1_Bacteria_Proteobacteria_Gammaproteobacteria_E-value=2e-110:0.156996)
0.796000:0.058046,
(BPGOHC1_Bacteria_Proteobacteria_Gammaproteobacteria_Oceanospiril:0.126228,
BPGOHH1_Bacteria_Proteobacteria_Gammaproteobacteria_Oceanospiril:0.072023)
0.908000:0.057845)0.743000:0.030162,
(BPGEED1_Bacteria_Proteobacteria_Gammaproteobacteria_Enterobacter:0.168461,
((BPGVVS2_Bacteria_Proteobacteria_Gammaproteobacteria_Vibrionales:0.015938,
BPGVVS1_Bacteria_Proteobacteria_Gammaproteobacteria_Vibrionales:0.012670)
0.988000:0.152305,
((BPGAAC1_Bacteria_Proteobacteria_Gammaproteobacteria_Alteromonada:0.133783,
BPGAAA1_Bacteria_Proteobacteria_Gammaproteobacteria_Aeromonadale:0.171894)
0.561000:0.025879,
(BPGCCR1_Bacteria_Proteobacteria_Gammaproteobacteria_Chromatiales:0.131433,
(BPGPPR1_Bacteria_Proteobacteria_Gammaproteobacteria_Pasteurellal:0.092663,
BPGPPP2_Bacteria_Proteobacteria_Gammaproteobacteria_Pasteurellal:0.088401)
0.994000:0.181451)0.651000:0.067771)0.861000:0.065852)0.138000:0.036427)
0.937000:0.089559)0.107000:0.022170)0.948000:0.153826,
(TO82D_6183060_Traduction_1-966_sens_indirect:0.056432,
BPGS1_Bacteria_Proteobacteria_Gammaproteobacteria_SAR86_cluster:0.000001)
1.000000:0.401836)0.955000:0.185869,
BCOL1_Bacteria_Cyanobacteria_Oscillatoriales_Leptolyngbya_E-valu:0.484769)
0.837000:0.068518,
BPPPe1_Bacteria_Planctomycetes_Planctomycetacia_Planctomycetales:0.344662)
0.853000:0.049404)0.637000:0.028124)0.816000:0.042485,
((BSSSSS1_Bacteria_Synergistetes_Synergistia_Synergistales_Synergi:0.740060,
(BA1_Bacteria_Armatimonadetes_E-value=3e-64_Bacteria_Armatimonade:0.370473,
BCCCD1_Bacteria_Chrysiogenetes_Chrysiogenales_Chrysiogenaceae_De:0.437334)
0.090000:0.030555)0.798000:0.058326,
(BFCTTS1_Bacteria_Firmicutes_Clostridia_Thermoanaerobacterales_Th:0.349029,
BDDD1_Bacteria_Deferribacteres_Deferribacterales_Deferribacterac:0.447804)
0.861000:0.070986)0.672000:0.026976)0.901000:0.073919,
((BCCCC1_Bacteria_Chitinivibrionia_Chitinivibrionales_Chitinivibri:0.526892,
BSSSS1_Bacteria_Spirochaetes_Spirochaetales_Spirochaetaceae_Spir:0.499011)
0.770000:0.097720,
BGGGG1_Bacteria_Gemmatimonadetes_Gemmatimonadales_Gemmatimonadac:0.488886)
0.627000:0.029707)0.812000:0.047807,
BPDDDD2_Bacteria_Proteobacteria_Deltaproteobacteria_Desulfovibri:0.545196)
0.519000:0.033258,
(BCCCC2_Bacteria_Chloroflexi_Chloroflexales_Chloroflexaceae_Chlor:0.265787,
(((((BPBMMM1_Bacteria_Proteobacteria_Betaproteobacteria_Methylophilal:0.010819,
BPBMu1_Bacteria_Proteobacteria_Betaproteobacteria_Methylophilale:0.085594)
0.499000:0.052562,
(BPBNNK1_Bacteria_Proteobacteria_Betaproteobacteria_Neisseriales:0.256730,
BPB1_Bacteria_Proteobacteria_Betaproteobacteria_E-value=3e-56_Ba:0.264322)
0.632000:0.058341)0.954000:0.153009,
BPGMMM1_Bacteria_Proteobacteria_Gammaproteobacteria_Methylococca:0.257213)
0.948000:0.177244,
((BPAM1_Bacteria_Proteobacteria_Alphaproteobacteria_Micavibrio_E-v:0.277656,
BPARuE1_Bacteria_Proteobacteria_Alphaproteobacteria_Rhodospirill:0.246644)
0.804000:0.111918,
BPARRR1_Bacteria_Proteobacteria_Alphaproteobacteria_Rickettsiale:0.256126)
0.885000:0.148318)0.416000:0.077036,
(BPZMMM1_Bacteria_Proteobacteria_Zetaproteobacteria_Mariprofundal:0.085509,
BPZ1_Bacteria_Proteobacteria_Zetaproteobacteria_E-value=7e-57_Ba:0.174602)
1.000000:0.461674)0.911000:0.094683)0.938000:0.133772)0.943000:0.152986,
BE1_Bacteria_Elusimicrobia_E-value=8e-58_Bacteria_Elusimicrobia:0.374331)
1.000000:0.377436,
BPES2_Bacteria_Proteobacteria_Epsilonproteobacteria_Sulfurovum_E:0.011223,
BPES1_Bacteria_Proteobacteria_Epsilonproteobacteria_Sulfurovum_E:0.016453);