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Forum "General Annotathon issues, using the interface, bugs etc."
Thread subject: The Frequently Asked Questions (FAQ) version 1 is complete
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The Frequently Asked Questions (FAQ) version 1 is complete
Supervisor
12 Dec 2008 19:14
Game master
I have just finished adding the "[b]in-group/out-group design[/b]" and "[b]FASTA sets from BLAST[/b]" howto's to the Frequently Asked Questions ([url=http://annotathon.univ-mrs.fr/Metagenes/index.php/Frequently_Asked_Questions]FAQ[/url] in the Help menu above). Table of contents is now:
[code]
1 Translation, ORFs and coding/non-coding status
2 INTERPRO: Identifying conserved protein domains
3 BLAST: Finding sequence homologs
4 Using BLAST to compile a list of FASTA formatted sequence homologs
5 A microbial view of the Tree Of Life
6 Designing sequence ingroups and outgroups for phylogenetic tree inference
6.1 Strategy for defining ingroups and outgroups
6.2 List of complete microbial genomes at NCBI
6.3 Common pitfalls & difficulties in building trees
7 Phylogeny.fr: Infering phylogenetic trees
[/code]
Let me know if this covers most foreseeable questions. Since the FAQ is a Wiki, you're also most welcome to update, upgrade, or extend at will (you will need to create a Wiki account since I have have not yet a shared user authentication between the Annotathon and the Wiki).
Good week end to all,
Pascal