Forum "ORF finding"

Thread subject: or f (sequence manipulation suite)

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or f (sequence manipulation suite)
Rabail
18 Apr 2011 9:21
Non evaluated contribution

ORF Finder results
Results for 869 residue sequence "GOS_2301010 Genomic DNA (Galapagos Islands: Mangrove on Isabella Island)" starting "CCTTGGATAT"

>ORF number 1 in reading frame 2 on the direct strand extends from base 293 to base 868. ATGCTTAATATAGATTTTCATGAAACTATTGGGCAAAGTCAATTTTCAGAAAAAGGAAAA CAAATAGTTATTAATGCATTAGAAAGACAAATAGCTAAAAGAGAAGATGATGGAGCTGTT TGTGTTTTATTAAATAGTAAGAAAAAGTATATTTTAAGAAGCAATCAAACAGCATCTTAT ATTACTCAGGATTTAGGAGCAGCAGTTGAAAGATTTAAAAAACATAATTTTAATAAAATG ATTTATATAACTGACTTTAGACAAAAACAGCATTTTGAAAGTTTATCTTTATTATTAAAA GCAATGAAATATGATTTTGCAGATAATCTTATACATTTACCTTTTGGAACTGTAAAATTT GGAAAAGAAATCATGGCTACAAGAAAAGGACAAATAATTCTTTTAAAAGATGTTTTAAAT AAAACAATTGAAAAAGCAAAAAACAATATAAAAAAGAGAAAAACAAAAGGAAGTCCTGAA AAAGTCGGAGTAGGAGCAATAAAATACATTATTTTAAAAAATGAACCTAAAAAAGATATT CAATTTTCATGGGAATCAGCATTATCTTTTGAAGGA

>Translation of ORF number 1 in reading frame 2 on the direct strand. MLNIDFHETIGQSQFSEKGKQIVINALERQIAKREDDGAVCVLLNSKKKYILRSNQTASY ITQDLGAAVERFKKHNFNKMIYITDFRQKQHFESLSLLLKAMKYDFADNLIHLPFGTVKF GKEIMATRKGQIILLKDVLNKTIEKAKNNIKKRKTKGSPEKVGVGAIKYIILKNEPKKDI QFSWESALSFEG