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Forum "Recherche d'ORF"

Thread subject: SMS ORfinder for reverse sequence

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SMS ORfinder for reverse sequence
D_Roy
27 Nov 2023 15:00
Non evaluated contribution

ORF Finder results

Results for 1365 residue sequence "OMRGCv2f_11508020 [ TARA OCEANS OM-RGCv2 - filtered : : : : [PNEC] North Pacific Equatorial Countercurrent Province (MRGID:21488) TARA_137_DCM_0.22-3 ]" starting "GTAGCCGCGA"


 

>ORF number 1 in reading frame 1 on the direct strand extends from base 373 to base 1365. CTGATAGCTGAAAGCTGTAAGCAGATAATTATGGCCTTTGAAACTTACGTTATATCCTGG AATCTTACAAAGAGATGCAACTTACGTTGCTCCCACTGCTATCTGGATGCTTCTTTTTTA ACTGGTGATGTTGTAGATGAACTCTCATCTGCCGAATGCCGGAAACTAATTGACCAGATG GCGGAAGTCAACCCTCATGCCTGCCTCATCCTGACTGGCGGAGAACCTCTTCTCAGGGAA GATATCTATGAAATTGCCTCTTATGCCAATGACAAAGGGTTTATGGTAGTTATGGGAACG AATGGCCTTTTGCTCAATGATGCTACTGTCCCTAAAATGCTCGATGCCGGAATAAAAGGA ATTGGAGTCAGTCTGGATTCTATTCATCCCGAAACACATGATCGTCTTCGCGGCCTTTCG GGTTCCTGGGAAAAAGCAATAAAAGGAATTGAAGCCGCTAAGAAATATGACCTTGACTAT CAGATTCAAACCACAGTTACTAAAGATAATTATGATGAAATACCAAAGATGATAGATTTT GCGCATAAACTGCGCGCAACCGGATTTTATCTTTTTTTCCTTGTGTGCACAGGCAGGGGA GAAAAGATGACCGATATTACACCAGAACAATATGAAGAAGTCCTGTCCTACGTATATAAA GTTCATGGGAACTATAATGGGATGATGGTCAGGGCAAAATGCGCCCCACATTTTAAAAGA ATCGCTTATCAGATGGATAAAAATTCTCCTTTATTGAAAGGGTATGTGGGAGGGTGCCGT GCGGGAACAAATTATTGCCGGATTACCCCTGGAGGAGATATTACTCCGTGTCCCTACATG CCTAATAGTGTCGGTAATGTGAAGGCCACAAACTTCAAAGAAATTTGGCATGATGCTGGA CTTTTTCAACAATTCCGCTATCCAAAATATGAAGGGAAATGTGAGCATTGTGAGTTTAAA CTTTTATGTGGAGGATGCAGGGCAAGGGCTTTA

 

>Translation of ORF number 1 in reading frame 1 on the direct strand. LIAESCKQIIMAFETYVISWNLTKRCNLRCSHCYLDASFLTGDVVDELSSAECRKLIDQM AEVNPHACLILTGGEPLLREDIYEIASYANDKGFMVVMGTNGLLLNDATVPKMLDAGIKG IGVSLDSIHPETHDRLRGLSGSWEKAIKGIEAAKKYDLDYQIQTTVTKDNYDEIPKMIDF AHKLRATGFYLFFLVCTGRGEKMTDITPEQYEEVLSYVYKVHGNYNGMMVRAKCAPHFKR IAYQMDKNSPLLKGYVGGCRAGTNYCRITPGGDITPCPYMPNSVGNVKATNFKEIWHDAG LFQQFRYPKYEGKCEHCEFKLLCGGCRARAL

 

 

No ORFs were found in reading frame 2.

 

No ORFs were found in reading frame 3.