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Forum "ORF finding"

Thread subject: NCBI orf finder result

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NCBI orf finder result

sam_marz
18 Apr 2011 9:34
Non evaluated contribution

fasta sequence of orf

>lcl|Sequence 1 ORF:1..506 Frame -3
TTGATGGTTAAAACTCTTAATGTAGGTATAGTTGGTGCTGGAATTCAAGGTGTATCTAATGCTCTATTTC
TACAAAAAAAAGGTTTTAGGGTAACAATCTTTGATAGAGATAATCCAGGTAGTCAAGCAGCATCATATGG
CAATGCAGGCCATTTTTCACCATATGCATCCCTTTCTTTAAATAGAACAGATGTACTGGCGGATGTGCCA
GCTATGTTACTAAGTTCCACAGGTCCACTTGCTTTAAAGTGGAACTATGTTCCTAAAATGATTCCATGGT
TTATAAAATTCATAATGAACACAACCAAAACCAAGATGATGCATACTGCCAGGAATATGCACCAAATTTT
AGATTTAGCTTTACCAGCTTACGATGAGTTGTTTGATGAGATAGACTTGGAGGGTTTAGTTGAAAACAAG
GGTATCCTTTATGTATGGAATGATAAGGACTTAAAAAGTAGAGAATTAGAAGTTAAAGTTAGAGAAGAAT
TAGGTGTAAAACAACA

translation of orf

>lcl|Sequence 1 ORF:1..506 Frame -3
MMVKTLNVGIVGAGIQGVSNALFLQKKGFRVTIFDRDNPGSQAASYGNAGHFSPYASLSLNRTDVLADVP
AMLLSSTGPLALKWNYVPKMIPWFIKFIMNTTKTKMMHTARNMHQILDLALPAYDELFDEIDLEGLVENK
GILYVWNDKDLKSRELEVKVREELGVKQ