Forum "ORF finding"

Thread subject: ferragial 3

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ferragial 3
ferragial1
17 Mar 2010 15:30
Non evaluated contribution
>ORF number 1 in reading frame 1 on the direct strand extends from base 1 to base 255.
TGTCGAAATAGGAGGCGTGGGCGATGCGGAACCCGGCGGCGGCCAGGCCCTCGGCAAGGC
GGCGGGTGTGACCGTGGATGCGAAGGGCGATCTTCTTCAGACCCTCGGGTCCGTGAAACA
GGGCGTACATGGAGGCGAGGACGGCGAGGAGGACCTGGGCGGTGCAAATGTTGCTGGTGG
CGCGGTCGCGGCGGATGTGCTGCTCGCGGGTCTGAAGGGAAAGCCGGTAGGCGGTACGGC
CGGCGGCGTCCTTAG

>Translation of ORF number 1 in reading frame 1 on the direct strand.
CRNRRRGRCGTRRRPGPRQGGGCDRGCEGRSSSDPRVRETGRTWRRGRRGGPGRCKCCWW
RGRGGCAARGSEGKAGRRYGRRRP*

>ORF number 2 in reading frame 1 on the direct strand extends from base 472 to base 675.
GGAGGGGCCGAAGGTCGTGAACACGGCCGTCGGATTCGGGATTCGCCACCACGCCGGCAA
AGATTTTGCCGGCGAGGTTCTGAGGGAAGTCGGCGGACTCGTGGATTTTCCAGCCGAGCA
CCGTGGCGCGAGTGTGGACGACCGCGGCGGTGGAGGGGTGGAGACCCGGGGAGAGCCAGA
GGGTGTCCCGTTCCGGCTGGTTGA

>Translation of ORF number 2 in reading frame 1 on the direct strand.
GGAEGREHGRRIRDSPPRRQRFCRRGSEGSRRTRGFSSRAPWRECGRPRRWRGGDPGRAR
GCPVPAG*

>ORF number 1 in reading frame 2 on the direct strand extends from base 2 to base 760.
GTCGAAATAGGAGGCGTGGGCGATGCGGAACCCGGCGGCGGCCAGGCCCTCGGCAAGGCG
GCGGGTGTGACCGTGGATGCGAAGGGCGATCTTCTTCAGACCCTCGGGTCCGTGAAACAG
GGCGTACATGGAGGCGAGGACGGCGAGGAGGACCTGGGCGGTGCAAATGTTGCTGGTGGC
GCGGTCGCGGCGGATGTGCTGCTCGCGGGTCTGAAGGGAAAGCCGGTAGGCGGTACGGCC
GGCGGCGTCCTTAGAGACGCCGATGAGCCGGCCGGGGAGGAGGCGCTGGTGGGCGAGCTT
GGTGGCGAGGTAAGCGGCGTGGGGTCCGCCGAAGCCGACAGGAACGCCGAAGCGTTGGGT
GTTGCCGACGGCGATATCGGCGCCGAGTTCGCCGGGCGGGGTAAAGAGCAACAGGGAAAG
AGGATCAGCGATAACAATGGAAAGGGCACCGCTCTCGCGGATTTTGGTGAGGAGGGGCCG
AAGGTCGTGAACACGGCCGTCGGATTCGGGATTCGCCACCACGCCGGCAAAGATTTTGCC
GGCGAGGTTCTGAGGGAAGTCGGCGGACTCGTGGATTTTCCAGCCGAGCACCGTGGCGCG
AGTGTGGACGACCGCGGCGGTGGAGGGGTGGAGACCCGGGGAGAGCCAGAGGGTGTCCCG
TTCCGGCTGGTTGACGGCGGCGTGGGCAAGAGAGGCAGCCTCTGCGGCGGCGGTACTTTC
ATCCAGGAGGGGAGGCATTGGCGATTTCCAGTCCCGTGA

>Translation of ORF number 1 in reading frame 2 on the direct strand.
VEIGGVGDAEPGGGQALGKAAGVTVDAKGDLLQTLGSVKQGVHGGEDGEEDLGGANVAGG
AVAADVLLAGLKGKPVGGTAGGVLRDADEPAGEEALVGELGGEVSGVGSAEADRNAEALG
VADGDIGAEFAGRGKEQQGKRISDNNGKGTALADFGEEGPKVVNTAVGFGIRHHAGKDFA
GEVLREVGGLVDFPAEHRGASVDDRGGGGVETRGEPEGVPFRLVDGGVGKRGSLCGGGTF
IQEGRHWRFPVP*

>ORF number 1 in reading frame 3 on the direct strand extends from base 555 to base 767.
GGGAAGTCGGCGGACTCGTGGATTTTCCAGCCGAGCACCGTGGCGCGAGTGTGGACGACC
GCGGCGGTGGAGGGGTGGAGACCCGGGGAGAGCCAGAGGGTGTCCCGTTCCGGCTGGTTG
ACGGCGGCGTGGGCAAGAGAGGCAGCCTCTGCGGCGGCGGTACTTTCATCCAGGAGGGGA
GGCATTGGCGATTTCCAGTCCCGTGAGTTCCAT

>Translation of ORF number 1 in reading frame 3 on the direct strand.
GKSADSWIFQPSTVARVWTTAAVEGWRPGESQRVSRSGWLTAAWAREAASAAAVLSSRRG
GIGDFQSREFH