Forum "Recherche d'ORF"

Thread subject: recherche ORF sens indirect cadre lecture1,2,3

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recherche ORF sens indirect cadre lecture1,2,3
warrios
2 Apr 2009 8:56
Non evaluated contribution
No ORFs were found in reading frame 1.

>ORF number 1 in reading frame 2 on the reverse strand extends from base 2 to base 316.
GAATGCCTTTGGATAGATCTTGAAAGTTTTTTTTCATCACCTGTTGCAACTCAAGATTTC
AATCTTTTATGCAGAGATTTCAATTGGATTTTTTTAAGTAATATTTCAATACTTAACGAT
GAGTCAATGGATTTGGTGAGGAGATTAATAGCTTTTGTTGACATAGCATACATCGCTAAT
ACTAAAATAAAGTTCTTTTATCCCGCAGCAGATTTACCTCATATTTATCGTGGCAAGGGG
CTTTCAAACTTGTGGGAGAGAACAGCAAGTAGATTGATTGAAATGTCATCCCAAGAGTAC
ATCTCAAAAAATTAA

>Translation of ORF number 1 in reading frame 2 on the reverse strand.
ECLWIDLESFFSSPVATQDFNLLCRDFNWIFLSNISILNDESMDLVRRLIAFVDIAYIAN
TKIKFFYPAADLPHIYRGKGLSNLWERTASRLIEMSSQEYISKN*

>ORF number 2 in reading frame 2 on the reverse strand extends from base 380 to base 820.
AAACAAATGAAAACAGAATCATTAAATAAGCAATCAGTAGATCCTAAATGGTATCTTGTG
GATGCTGATGGGCAAATTCTTGGAAGATTTGCCTCTAAATTAGCTGATAGGCTTCGTGGA
AAAGATAAGCCAACCTTTACTCCTCATACTGATGGTGGAGACTTTGTGGTGGTCATTAAT
GCAGAAAAAGTAGCTGTCACTGGAAGCAAGTATGATAAGAAAACTTATTACAAACACTCA
CAGTATCCTGGAGGCCTTAAAGAAACAACTTTTAAAGAAATGATTAATAAAAAGCCTGAA
GAAATTATTAGGCTCGCTGTAAAAGGCATGCTCCCTAAAAATAAGCTAAGCAATCAAATC
ATAAAGAAATTAAAAATTTATGCTGGTTCAGATCATCCGCATGACTCACAACAACCTGAA
ATTTGGAAACCAATTAAATGA

>Translation of ORF number 2 in reading frame 2 on the reverse strand.
KQMKTESLNKQSVDPKWYLVDADGQILGRFASKLADRLRGKDKPTFTPHTDGGDFVVVIN
AEKVAVTGSKYDKKTYYKHSQYPGGLKETTFKEMINKKPEEIIRLAVKGMLPKNKLSNQI
IKKLKIYAGSDHPHDSQQPEIWKPIK*

>ORF number 1 in reading frame 3 on the reverse strand extends from base 483 to base 572.
CTGATAGGCTTCGTGGAAAAGATAAGCCAACCTTTACTCCTCATACTGATGGTGGAGACT
TTGTGGTGGTCATTAATGCAGAAAAAGTAG

>Translation of ORF number 1 in reading frame 3 on the reverse strand.
LIGFVEKISQPLLLILMVETLWWSLMQKK*

>ORF number 2 in reading frame 3 on the reverse strand extends from base 573 to base 662.
CTGTCACTGGAAGCAAGTATGATAAGAAAACTTATTACAAACACTCACAGTATCCTGGAG
GCCTTAAAGAAACAACTTTTAAAGAAATGA

>Translation of ORF number 2 in reading frame 3 on the reverse strand.
LSLEASMIRKLITNTHSILEALKKQLLKK*