Forum "Analyse phylogénétique"

Sujet de discussion: enracinement de l'arbre

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enracinement de l'arbre
SofiaOuarriche
24 Apr 2022 20:57
Contribution non évaluée

Bonjour madame, je n'arrive pas a enraciner mon arbre que voici: Il y a des groupes exterieur un peu partout dans l'arbre. Je ne vois pas comment les rerouper

                                                   ++ BPAHHH1-E-value1e-64-Bacteria-Proteobacteria-Alpha      
                                   +---------------+ 1.00                                                     
                               +---+ 0.93          ++ BPARCC1-E-value3e-63-Bacteria-Proteobacteria-Alpha      
                               |   |                                                                          
                               |   +--------------+ BPARRRRs1-E-value1e-59-Bacteria-Proteobacteria-Alp        
                               |                                                                              
                              ++ 0.80        +------+ BPA1-E-value4e-106-Bacteria-Proteobacteria-Alphapr      
                              ||           +-+ 0.01                                                           
                              ||           | +--+ BPAPPC1-E-value3e-119-Bacteria-Proteobacteria-Alph          
                              ||           |                                                                  
                              |+-----------+ 1.00---+ BPAPP2-E-value6e-122-Bacteria-Proteobacteria-Alpha      
                              |            |  ++ 0.81                                                         
                              |            |  |+----+ BPAR1-E-value1e-125-Bacteria-Proteobacteria-Alphap      
                              |            |  |                                                               
                              |            +--+ 0.97 BPAPP1-E-value4e-147-Bacteria-Proteobacteria-Alpha       
                              |               | +-+ 0.97                                                      
                              |               +-+ 0.82Translation-of-ORF-number-1-in-reading-frame-1-on-      
                              |                 |                                                             
                              |                 +---+ BPAPPCu1-E-value1e-132-Bacteria-Proteobacteria-Alp      
                              |                                                                               
                       +------+ 0.98                 +--+ BPACCBu1-E-value7e-53-Bacteria-Proteobacteria-Alph  
                       |      |        +-------------+ 1.00                                                   
                       |      |     +--+ 0.94        +----+ BPGEEEE1-E-value5e-51-Bacteria-Proteobacteria-Gamm
                       |      |     |  |                                                                      
                       |      |   +-+ 0.08-----+ BPAMMMM1-E-value2e-54-Bacteria-Proteobacteria-Alph           
                       |      |   | |                                                                         
                       |      |   | +-------+ BPAKKKu1-E-value1e-50-Bacteria-Proteobacteria-Alph              
                       |      |   |                                                                           
                       |      |   |     +-----+ BPAR2-E-value1e-54-Bacteria-Proteobacteria-Alphapr            
                       |      |   |   +-+ 0.00                                                                
                       |      |   |   | +------+ BPARTT1-E-value6e-65-Bacteria-Proteobacteria-Alpha           
                       |      |   |   |                                                                       
                       |      |   |  ++ 0.13+------+ BPAM1-E-value1e-55-Bacteria-Proteobacteria-Alphapr       
                       |      |   |  ||  +--+ 0.93                                                            
                       |      +---+ 0.97-+ 0.91--------+ BPZ1-E-value2e-53-Bacteria-Proteobacteria-Zetaprot   
                       |          |  | 0.76                                                                   
                       |          |  |   +------+ BPARR1-E-value1e-65-Bacteria-Proteobacteria-Alphap          
 +---------------------+ 1.00     |  |                                                                        
 |                     |          | ++-0.00---+ BPARRM1-E-value4e-61-Bacteria-Proteobacteria-Alpha            
 |                     |          | ||                                                                        
 |                     |          | ||   +-----+ BPASSO1-E-value7e-61-Bacteria-Proteobacteria-Alpha           
 |                     |          | |+---+ 0.98                                                               
 |                     |          | |    +-------+ BPASSS1-E-value3e-65-Bacteria-Proteobacteria-Alpha         
 |                     |          +-+ 0.49                                                                    
 |                     |            |        +-----+ BPAHMMu1-E-value1e-52-Bacteria-Proteobacteria-Alph       
 |                     |            |       ++ 0.09                                                           
 |                     |            |    +--++0.98--+ BPAHXA1-E-value3e-63-Bacteria-Proteobacteria-Alpha      
 |                     |            |    |  |                                                                 
=|                     |            |    |  +----+ BPARRA1-E-value1e-53-Bacteria-Proteobacteria-Alpha         
 |                     |            +----+ 0.99                                                               
 |                     |                 |     +-+ BPBBCH1-E-value4e-54-Bacteria-Proteobacteria-Betap         
 |                     |                 +-----+ 1.00                                                         
 |                     |                       +--+ BPBBCKuK1-E-value7e-53-Bacteria-Proteobacteria-Bet        
 |                     |                                                                                      
 |                     +--------------+ BPGPPP1-E-value1e-52-Bacteria-Proteobacteria-Gamma                    
 |                                                                                                            
 | BPD1-E-value2e-54-Bacteria-Proteobacteria-Deltapro                                                         
 |                                                                                                            
 | BPDD1-E-value7e-54-Bacteria-Proteobacteria-Deltapr   
SofiaOuarriche
24 Apr 2022 21:42
Contribution non évaluée

Rebonjour, je souhaiterai exclure les groupe surligné afin qu'ils soient du cotés des groupes exterieurs mais je n'y parvient pas. Apres il me resterai une zeta et un gama du cotés du groupe d'étude mais est ce dérangeant ? Peut on l'expliquer ? Merci 

 

                                                   ++ BPAHHH1-E-value1e-64-Bacteria-Proteobacteria-Alpha      
                                   +---------------+ 1.00                                                     
                               +---+ 0.93          ++ BPARCC1-E-value3e-63-Bacteria-Proteobacteria-Alpha      
                               |   |                                                                          
                               |   +--------------+ BPARRRRs1-E-value1e-59-Bacteria-Proteobacteria-Alp        
                               |                                                                              
                              ++ 0.80        +------+ BPA1-E-value4e-106-Bacteria-Proteobacteria-Alphapr      
                              ||           +-+ 0.01                                                           
                              ||           | +--+ BPAPPC1-E-value3e-119-Bacteria-Proteobacteria-Alph          
                              ||           |                                                                  
                              |+-----------+ 1.00---+ BPAPP2-E-value6e-122-Bacteria-Proteobacteria-Alpha      
                              |            |  ++ 0.81                                                         
                              |            |  |+----+ BPAR1-E-value1e-125-Bacteria-Proteobacteria-Alphap      
                              |            |  |                                                               
                              |            +--+ 0.97 BPAPP1-E-value4e-147-Bacteria-Proteobacteria-Alpha       
                              |               | +-+ 0.97                                                      
                              |               +-+ 0.82Translation-of-ORF-number-1-in-reading-frame-1-on-      
                              |                 |                                                             
                              |                 +---+ BPAPPCu1-E-value1e-132-Bacteria-Proteobacteria-Alp      
                              |                                                                               
                       +------+ 0.98                 +--+ BPACCBu1-E-value7e-53-Bacteria-Proteobacteria-Alph  
                       |      |        +-------------+ 1.00                                                   
                       |      |     +--+ 0.94        +----+ BPGEEEE1-E-value5e-51-Bacteria-Proteobacteria-Gamm
                       |      |     |  |                                                                      
                       |      |   +-+ 0.08-----+ BPAMMMM1-E-value2e-54-Bacteria-Proteobacteria-Alph           
                       |      |   | |                                                                         
                       |      |   | +-------+ BPAKKKu1-E-value1e-50-Bacteria-Proteobacteria-Alph              
                       |      |   |                                                                           
                       |      |   |     +-----+ BPAR2-E-value1e-54-Bacteria-Proteobacteria-Alphapr            
                       |      |   |   +-+ 0.00                                                                
                       |      |   |   | +------+ BPARTT1-E-value6e-65-Bacteria-Proteobacteria-Alpha           
                       |      |   |   |                                                                       
                       |      |   |  ++ 0.13+------+ BPAM1-E-value1e-55-Bacteria-Proteobacteria-Alphapr       
                       |      |   |  ||  +--+ 0.93                                                            
                       |      +---+ 0.97-+ 0.91--------+ BPZ1-E-value2e-53-Bacteria-Proteobacteria-Zetaprot   
                       |          |  | 0.76                                                                   
                       |          |  |   +------+ BPARR1-E-value1e-65-Bacteria-Proteobacteria-Alphap          
 +---------------------+ 1.00     |  |                                                                        
 |                     |          | ++-0.00---+ BPARRM1-E-value4e-61-Bacteria-Proteobacteria-Alpha            
 |                     |          | ||                                                                        
 |                     |          | ||   +-----+ BPASSO1-E-value7e-61-Bacteria-Proteobacteria-Alpha           
 |                     |          | |+---+ 0.98                                                               
 |                     |          | |    +-------+ BPASSS1-E-value3e-65-Bacteria-Proteobacteria-Alpha         
 |                     |          +-+ 0.49                                                                    
 |                     |            |        +-----+ BPAHMMu1-E-value1e-52-Bacteria-Proteobacteria-Alph       
 |                     |            |       ++ 0.09                                                           
 |                     |            |    +--++0.98--+ BPAHXA1-E-value3e-63-Bacteria-Proteobacteria-Alpha      
 |                     |            |    |  |                                                                 
=|                     |            |    |  +----+ BPARRA1-E-value1e-53-Bacteria-Proteobacteria-Alpha         
 |                     |            +----+ 0.99                                                               
 |                     |                 |     +-+ BPBBCH1-E-value4e-54-Bacteria-Proteobacteria-Betap         
 |                     |                 +-----+ 1.00                                                         
 |                     |                       +--+ BPBBCKuK1-E-value7e-53-Bacteria-Proteobacteria-Bet        
 |                     |                                                                                      
 |                     +--------------+ BPGPPP1-E-value1e-52-Bacteria-Proteobacteria-Gamma                    
 |                                                                                                            
 | BPD1-E-value2e-54-Bacteria-Proteobacteria-Deltapro                                                         
 |                                                                                                            
 | BPDD1-E-value7e-54-Bacteria-Proteobacteria-Deltapr