Forum "Alignement multiple: CLUSTALW"

Thread subject: alignement bizarre

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alignement bizarre
rachel
22 Apr 2021 11:15
Non evaluated contribution

Bonjour,

mon alignement est très hétérogène. que des tirets au débuts, et à partir d'une certaine longueur l'alignement devient plus ou moins correct. comment expliquer cela? puis-je alors garder ma séquence? 

merci

CLUSTAL FORMAT: MUSCLE (3.8) multiple sequence alignment


Translatio      ------------------------------------------------------------
BLu1_Bacte      ------------------------------------------------------------
BCu1_Bacte      ------------------------------------------------------------
BV1_Bacter      ------------------------------------------------------------
BC7_Bacter      ------------------------------------------------------------
BC8_Bacter      ------------------------------------------------------------
B1_Bacteri      ------------------------------------------------------------
BR1_Bacter      ------------------------------------------------------------
BSSS1_Bact      ------------------------------------------------------------
BSSSSA1_Ba      ------------------------------------------------------------
BSSSSu1_Ba      ------------------------------------------------------------
BC6_Bacter      ------------------------------------------------------------
BC5_Bacter      ------------------------------------------------------------
BCCC1_Bact      ------------------------------------------------------------
BP1_Bacter      ------------------------------------------------------------
BN1_Bacter      ------------------------------------------------------------
BPPGG1_Bac      ------------------------------------------------------------
BCC3_Bacte      ------------------------------------------------------------
BA2_Bacter      ------------------------------------------------------------
BA1_Bacter      MLNNNKAKDIILITNSPGELSSWVKNTLEKLKSLSSDRIIILLVPCPYASGKEEEIAKNL
BF1_Bacter      ------------------------------------------------------------
BCCCCC1_Ba      ------------------------------------------------------------
BCD1_Bacte      ------------------------------------------------------------
BC2_Bacter      ------------------------------------------------------------
BPGCE1_Bac      ------------------------------------------------------------
BCCCC1_Bac      ------------------------------------------------------------
BCC1_Bacte      ------------------------------------------------------------
BCCCCC2_Ba      ------------------------------------------------------------
BC1_Bacter      ------------------------------------------------------------
BG1_Bacter      ------------------------------------------------------------
BBB1_Bacte      ------------------------------------------------------------
BI1_Bacter      ------------------------------------------------------------
BCC2_Bacte      ------------------------------------------------------------
BC3_Bacter      ------------------------------------------------------------
BC4_Bacter      ------------------------------------------------------------
BF2_Bacter      ------------------------------------------------------------
BPOOPP1_Ba      ------------------------------------------------------------
BPOOuO1_Ba      ------------------------------------------------------------
                                                                            

Translatio      ------------------------------------------------------------
BLu1_Bacte      ------------------------------------------------------------
BCu1_Bacte      ------------------------------------------------------------
BV1_Bacter      ------------------------------------------------------------
BC7_Bacter      ------------------------------------------------------------
BC8_Bacter      ------------------------------------------------------------
B1_Bacteri      ------------------------------------------------------------
BR1_Bacter      ------------------------------------------------------------
BSSS1_Bact      ------------------------------------------------------------
BSSSSA1_Ba      ------------------------------------------------------------
BSSSSu1_Ba      ------------------------------------------------------------
BC6_Bacter      ------------------------------------------------------------
BC5_Bacter      ------------------------------------------------------------
BCCC1_Bact      ------------------------------------------------------------
BP1_Bacter      ------------------------------------------------------------
BN1_Bacter      ------------------------------------------------------------
BPPGG1_Bac      ------------------------------------------------------------
BCC3_Bacte      ------------------------------------------------------------
BA2_Bacter      ------------------------------------------------------------
BA1_Bacter      EGVDLVIAPGDFIKFLLGLYPNGYKPAKAGVVVFLGGDFWHALLIAKKLKFPAAAYSMRA
BF1_Bacter      ------------------------------------------------------------
BCCCCC1_Ba      ------------------------------------------------------------
BCD1_Bacte      ------------------------------------------------------------
BC2_Bacter      ------------------------------------------------------------
BPGCE1_Bac      ------------------------------------------------------------
BCCCC1_Bac      ------------------------------------------------------------
BCC1_Bacte      ------------------------------------------------------------
BCCCCC2_Ba      ------------------------------------------------------------
BC1_Bacter      ------------------------------------------------------------
BG1_Bacter      ------------------------------------------------------------
BBB1_Bacte      ------------------------------------------------------------
BI1_Bacter      ------------------------------------------------------------
BCC2_Bacte      ------------------------------------------------------------
BC3_Bacter      ------------------------------------------------------------
BC4_Bacter      ------------------------------------------------------------
BF2_Bacter      ------------------------------------------------------------
BPOOPP1_Ba      ------------------------------------------------------------
BPOOuO1_Ba      ------------------------------------------------------------
                                                                            

Translatio      ------------------------------------------------------------
BLu1_Bacte      ------------------------------------------------------------
BCu1_Bacte      ------------------------------------------------------------
BV1_Bacter      ------------------------------------------------------------
BC7_Bacter      ------------------------------------------------------------
BC8_Bacter      ------------------------------------------------------------
B1_Bacteri      ------------------------------------------------------------
BR1_Bacter      ------------------------------------------------------------
BSSS1_Bact      ------------------------------------------------------------
BSSSSA1_Ba      ------------------------------------------------------------
BSSSSu1_Ba      ------------------------------------------------------------
BC6_Bacter      ------------------------------------------------------------
BC5_Bacter      ------------------------------------------------------------
BCCC1_Bact      ------------------------------------------------------------
BP1_Bacter      ------------------------------------------------------------
BN1_Bacter      ------------------------------------------------------------
BPPGG1_Bac      ------------------------------------------------------------
BCC3_Bacte      ------------------------------------------------------------
BA2_Bacter      ------------------------------------------------------------
BA1_Bacter      SRWNKYFEYLGVSDNSVKEFLIKWGYPEKNIEVAGNLMFDQVCPVYKKEEALKLWNLTEE
BF1_Bacter      ------------------------------------------------------------
BCCCCC1_Ba      ------------------------------------------------------------
BCD1_Bacte      ------------------------------------------------------------
BC2_Bacter      ------------------------------------------------------------
BPGCE1_Bac      ------------------------------------------------------------
BCCCC1_Bac      ------------------------------------------------------------
BCC1_Bacte      ------------------------------------------------------------
BCCCCC2_Ba      ------------------------------------------------------------
BC1_Bacter      ------------------------------------------------------------
BG1_Bacter      ------------------------------------------------------------
BBB1_Bacte      ------------------------------------------------------------
BI1_Bacter      ------------------------------------------------------------
BCC2_Bacte      ------------------------------------------------------------
BC3_Bacter      ------------------------------------------------------------
BC4_Bacter      ------------------------------------------------------------
BF2_Bacter      ------------------------------------------------------------
BPOOPP1_Ba      ------------------------------------------------------------
BPOOuO1_Ba      ------------------------------------------------------------
                                                                            

Translatio      ------------------------------------------------------------
BLu1_Bacte      ------------------------------------------------------------
BCu1_Bacte      ------------------------------------------------------------
BV1_Bacter      ------------------------------------------------------------
BC7_Bacter      ------------------------------------------------------------
BC8_Bacter      ------------------------------------------------------------
B1_Bacteri      ------------------------------------------------------------
BR1_Bacter      ------------------------------------------------------------
BSSS1_Bact      ------------------------------------------------------------
BSSSSA1_Ba      ------------------------------------------------------------
BSSSSu1_Ba      ------------------------------------------------------------
BC6_Bacter      ------------------------------------------------------------
BC5_Bacter      ------------------------------------------------------------
BCCC1_Bact      ------------------------------------------------------------
BP1_Bacter      ------------------------------------------------------------
BN1_Bacter      ------------------------------------------------------------
BPPGG1_Bac      ------------------------------------------------------------
BCC3_Bacte      ------------------------------------------------------------
BA2_Bacter      ------------------------------------------------------------
BA1_Bacter      NIIIGIFPGSRLYHVRESLPFFLKAAEEIKENFSQARFFLGLSPFITLNELKTCLKPSPS
BF1_Bacter      ------------------------------------------------------------
BCCCCC1_Ba      ------------------------------------------------------------
BCD1_Bacte      ------------------------------------------------------------
BC2_Bacter      ------------------------------------------------------------
BPGCE1_Bac      ------------------------------------------------------------
BCCCC1_Bac      ------------------------------------------------------------
BCC1_Bacte      ------------------------------------------------------------
BCCCCC2_Ba      ------------------------------------------------------------
BC1_Bacter      ------------------------------------------------------------
BG1_Bacter      ------------------------------------------------------------
BBB1_Bacte      ------------------------------------------------------------
BI1_Bacter      ------------------------------------------------------------
BCC2_Bacte      ------------------------------------------------------------
BC3_Bacter      ------------------------------------------------------------
BC4_Bacter      ------------------------------------------------------------
BF2_Bacter      ------------------------------------------------------------
BPOOPP1_Ba      ------------------------------------------------------------
BPOOuO1_Ba      ------------------------------------------------------------
                                                                            

Translatio      ------------------------------------------------------------
BLu1_Bacte      ------------------------------------------------------------
BCu1_Bacte      ------------------------------------------------------------
BV1_Bacter      ------------------------------------------------------------
BC7_Bacter      ------------------------------------------------------------
BC8_Bacter      ------------------------------------------------------------
B1_Bacteri      ------------------------------------------------------------
BR1_Bacter      ------------------------------------------------------------
BSSS1_Bact      ------------------------------------------------------------
BSSSSA1_Ba      ------------------------------------------------------------
BSSSSu1_Ba      ------------------------------------------------------------
BC6_Bacter      ------------------------------------------------------------
BC5_Bacter      ------------------------------------------------------------
BCCC1_Bact      ------------------------------------------------------------
BP1_Bacter      ------------------------------------------------------------
BN1_Bacter      ------------------------------------------------------------
BPPGG1_Bac      ------------------------------------------------------------
BCC3_Bacte      ------------------------------------------------------------
BA2_Bacter      ------------------------------------------------------------
BA1_Bacter      GIEGTSAELFSKEKINYLKTKNGILVQVVNQYQYDLMNLSALALTIPGTNTAELAVLGTP
BF1_Bacter      ------------------------------------------------------------
BCCCCC1_Ba      ------------------------------------------------------------
BCD1_Bacte      ------------------------------------------------------------
BC2_Bacter      ------------------------------------------------------------
BPGCE1_Bac      ------------------------------------------------------------
BCCCC1_Bac      ------------------------------------------------------------
BCC1_Bacte      ------------------------------------------------------------
BCCCCC2_Ba      ------------------------------------------------------------
BC1_Bacter      ------------------------------------------------------------
BG1_Bacter      ------------------------------------------------------------
BBB1_Bacte      ------------------------------------------------------------
BI1_Bacter      ------------------------------------------------------------
BCC2_Bacte      ------------------------------------------------------------
BC3_Bacter      ------------------------------------------------------------
BC4_Bacter      ------------------------------------------------------------
BF2_Bacter      ------------------------------------------------------------
BPOOPP1_Ba      ------------------------------------------------------------
BPOOuO1_Ba      ------------------------------------------------------------
                                                                            

Translatio      ------------------------------------------------------------
BLu1_Bacte      ------------------------------------------------------------
BCu1_Bacte      ------------------------------------------------------------
BV1_Bacter      ------------------------------------------------------------
BC7_Bacter      ------------------------------------------------------------
BC8_Bacter      ------------------------------------------------------------
B1_Bacteri      ------------------------------------------------------------
BR1_Bacter      ------------------------------------------------------------
BSSS1_Bact      ------------------------------------------------------------
BSSSSA1_Ba      ------------------------------------------------------------
BSSSSu1_Ba      ------------------------------------------------------------
BC6_Bacter      ------------------------------------------------------------
BC5_Bacter      ------------------------------------------------------------
BCCC1_Bact      ------------------------------------------------------------
BP1_Bacter      ------------------------------------------------------------
BN1_Bacter      ------------------------------------------------------------
BPPGG1_Bac      ------------------------------------------------------------
BCC3_Bacte      ------------------------------------------------------------
BA2_Bacter      ------------------------------------------------------------
BA1_Bacter      MIVASSWKAKIPRGGLTGFLGSILTGYAKKKFLFWILKRIKYTALPNQMAKEEIVPEIIV
BF1_Bacter      ------------------------------------------------------------
BCCCCC1_Ba      ------------------------------------------------------------
BCD1_Bacte      ------------------------------------------------------------
BC2_Bacter      ------------------------------------------------------------
BPGCE1_Bac      ------------------------------------------------------------
BCCCC1_Bac      ------------------------------------------------------------
BCC1_Bacte      ------------------------------------------------------------
BCCCCC2_Ba      ------------------------------------------------------------
BC1_Bacter      ------------------------------------------------------------
BG1_Bacter      ------------------------------------------------------------
BBB1_Bacte      ------------------------------------------------------------
BI1_Bacter      ------------------------------------------------------------
BCC2_Bacte      ------------------------------------------------------------
BC3_Bacter      ------------------------------------------------------------
BC4_Bacter      ------------------------------------------------------------
BF2_Bacter      ------------------------------------------------------------
BPOOPP1_Ba      ------------------------------------------------------------
BPOOuO1_Ba      ------------------------------------------------------------
                                                                            

Translatio      -------------------------------TETVEEANELIALAERKGTIIQVGHIERL
BLu1_Bacte      --------------------------------------------------------MFKD
BCu1_Bacte      --------------------------------------------------MKVLEHFTRA
BV1_Bacter      --------------------------------------------------MALRNEFKTQ
BC7_Bacter      ------------------------------------------------------------
BC8_Bacter      --------------------------------------------------MLLQTQLQLS
B1_Bacteri      --------------------------------------------------MTLRKTLEEE
BR1_Bacter      ---------------------------------------------------MITDRQLNQ
BSSS1_Bact      --------------------------------------------------------MDKA
BSSSSA1_Ba      ------------------------------------------------------MNLQEV
BSSSSu1_Ba      ------------------------------------------------------MNLIEV
BC6_Bacter      --------------------------------------MVSETNAKPPLDFSNKGLAVRL
BC5_Bacter      ----------------------------------------------------MENWKVKL
BCCC1_Bact      ----------------------------------------------------MQPWPLCL
BP1_Bacter      ----------------------------------MSTVEAPALPEVRPEVVRGETPSARI
BN1_Bacter      --------------------------------------------------------MIDL
BPPGG1_Bac      -------------------------------MPDRITYLPNHRNVMANTVRERTISITSL
BCC3_Bacte      -----------------------------------------------------MGFIKRT
BA2_Bacter      -------------------MRCRMKACGYTTEVVLILPTSRTLSNWPESVQIEPDTTIQL
BA1_Bacter      ENKAREITQVAVELLKDKKKQEEMSLKLKNLIKRNSSSEKMAHLILKALNSNQTKTKFNF
BF1_Bacter      --------------------------------------------------------MTKI
BCCCCC1_Ba      ---------------------------------------------------------MDI
BCD1_Bacte      ---------------------------------------------------------MXI
BC2_Bacter      ---------------------------------------------------------MDT
BPGCE1_Bac      ---------------------------------------------------------MDL
BCCCC1_Bac      ---------------------------------------------------------MSF
BCC1_Bacte      ---------------------------------------------------------MHL
BCCCCC2_Ba      ---------------------------------------------------------MNL
BC1_Bacter      ---------------------------------------------------------MKL
BG1_Bacter      ---------------------------------------------------------MDI
BBB1_Bacte      ---------------------------------------------------------MDI
BI1_Bacter      ---------------------------------------------------------MDI
BCC2_Bacte      --------------------------------------------------------MTDL
BC3_Bacter      ---------------------------------------------------------MTL
BC4_Bacter      ---------------------------------------------------------MRI
BF2_Bacter      ----------------------------------------------------MEAFLLKL
BPOOPP1_Ba      ------------------------------------------------MSSNQQSQTIAI
BPOOuO1_Ba      -------------------------------------------------MTETNVQSSGL
                                                                            

Translatio      NPALLPLANFEINPKFIEVQRLAPYMSRGTDIPVVLDL------MI-HDIDLVLAIVRSP
BLu1_Bacte      SLYFIKKKRILLSRFLVVLITAIFIFTDHSWKDEFYHF------IIFQSIGGFLVAFCIL
BCu1_Bacte      GGVLFRWRSYLPLLLLP----LFVASLIGFRYPYDSHGFDLAWEIG----CFVLAMAGLA
BV1_Bacter      GDFLFKNRSYIPIIAVL----VALYIYTTDKNIKEFNLIGLDVYSF-EIMCFLVCLLGLL
BC7_Bacter      ------------LITTA----LLFVS----AEELTLSQ-----ELF----CFGISNLGLC
BC8_Bacter      GNLLFRWRSYLPIFLLG----LLVAAMRHYQYPGGTHELDFFWELL----CLFVSYFGLA
B1_Bacteri      GNWLFQRRSYLPVFLMG----IMLIGLNQFEYAGHSHFMDQFWELF----CMFVAFFGLG
BR1_Bacter      GNFLFRYRGVLPIPIILL---CILFYYLNSNSISNHQY------II----CLTISVSGLF
BSSS1_Bact      GSLAFKYRGGIWTVLFL----AVLLM----AKPSEARI------WP----GLVFVLFGQA
BSSSSA1_Ba      RKTAFKWRGGLWTALYL----IILFL----AKPTYESI------IW----GIIFVAAGQA
BSSSSu1_Ba      RKAAFKWRGGIWTAFYL----VIFFL----AKPIYEGV------LL----GLMFVIAGQA
BC6_Bacter      GRLFFQSRNFISAPLFV----FMLFFFRWEYENDAVLW------PT----GIALVCLGET
BC5_Bacter      GNFLFKWRSFTQLPWIV----IVLIF----LKPYYPVFTIKGEPFL-TILGFLLAFSGEM
BCCC1_Bact      GKFLFRFRSFTPLPLIL----LTFIF----FKPLSPSW------LW-TAIGLAAAFLGEG
BP1_Bacter      GAVLFKVRGFTPVPFYL----AGMLVPWMREPRWQLAW------AI----GLPLIVIGEA
BN1_Bacter      SKLVGKNRIVTSLLLGM----AFWFF----ARPSFVSI------AA----GAPFVLLGEA
BPPGG1_Bac      GGTLFKIRSYTLVPVAI----ALLVLPWVLSPDPEWAY------SWMIGLGVGLLTIGTL
BCC3_Bacte      GHFFFVWRDKLPVPLVL----AMAGC----ARPRLLGW------LL----GLPFIVLGES
BA2_Bacter      GGWLFRHRTALPLPVAV----AILVLRVGEAPPSARLV------AA----GIVVTALGEL
BA1_Bacter      REWVFKWRGWIISPLAI----LILYI----AKPTLLSF------RI----GITLAALGEI
BF1_Bacter      GTFFFKARSYTPVPFIP----FIIYF----AHPTTLSI------IL----GFISMVCGEA
BCCCCC1_Ba      RNFFFKYRSYTPIPIGI----MIVYF----ARVENAYL------LI----GIPLLLIGEL
BCD1_Bacte      RNFFFKXRSYTXXPLAX----LIIYF----SQPXXPYV------XY----GLIXLGIGEC
BC2_Bacter      GNFLFKYRSYTPIPLAI----YILYN----SHPEIQNL------LI----GFILISIGES
BPGCE1_Bac      GKIFYNTRSYTPIPFVI----LVLVF----AEPTVQSL------II----GGAVVLLGAL
BCCCC1_Bac      GDMVFKLRGYMPVPFLV----AGIVL----ANPRQDLV------IF----GGILMVIGEL
BCC1_Bacte      KPLLYKYRGYTPLPMVL----IFAFY----ARPSSVSF------GW----GILLMVLGES
BCCCCC2_Ba      GQFFFKYRGFTPIPMVL----IVLIF----AQPTPVSF------LW----GILLMLAGES
BC1_Bacter      GEFFFKYRGVTPIPLVL----VILYF----AQPTPQSF------LY----GIGLMVLGEI
BG1_Bacter      RAAVFAARSYTPIPLLI----AVLIM----AEPGPMTF------IS----GGLLVLIGES
BBB1_Bacte      RLKIFELRSYTPLPFVA----LMLIY----AEPTPVTL------AA----GLALALLGEA
BI1_Bacter      RKTLFKYRSYTPIPFLV----LMIIY----AKPTISSI------LI----GLVLVILGEF
BCC2_Bacte      RQKIFSYRSYTPIPFLI----VMILF----AKPSLWSL------AI----GFIIALIGEL
BC3_Bacter      GQFFFKYRSYTPIPFLI----PMLLY----ARPTITTI------AA----GAVFVLTGEI
BC4_Bacter      GEVLFSKRGYVGIPYFL----LVLFL----SKWDSRLF------IV----GLLICLFGEI
BF2_Bacter      GQWFFRYRDYTPIPIIL----LLFII----AEFNPVYF------FT----GISLTVIGEL
BPOOPP1_Ba      GEWFFKYRDYTPIPLII----MLLIW----SEATVVSA------TL----GVLSICFGEL
BPOOuO1_Ba      GETFFKYRDYTPIPLIL----IVLFI----AKPSVLTA------TL----GTLVLTFGEL
                                                                            

Translatio      VKQIHASGV--SIMTESVDI-ANARIRFENGTVASITSSRVAKDRVRKMKVFQRD-----
BLu1_Bacte      GRLWSALYI--AG--------NKTKNLISEGPYSMVRNPLYFFSFFGAVGLGLTTENLL-
BCu1_Bacte      VRMFTVGSAPRGTSGRNTRA-QKAEVLNTTGPYSVVRHPLYVGNYLIALGLSFFSRT--W
BV1_Bacter      IRVLAVGYSSDNTSGRNTTVGQKADSINRTGLYSLFRHPLYIGNYFMWIGIAAFTQN--F
BC7_Bacter      IRIFTIGYVPAGTSGRNTAL-QIAKTLNTKGIYSIIRHPLYLGNFFMWLGLACMTGN--L
BC8_Bacter      IRAYTVGHAPARTSGRNTET-QIADVLNTTGAYSMLRNPLYLGNFFMGLGIFMFAFH--I
B1_Bacteri      IRAFTIGQTPKNTSGRNTSR-QIADTLNTTGMYSIVRHPLYVGNFFCWLGISLFTRL--W
BR1_Bacter      IRMFTIGFAYHKTSGKNTKK-QIAEKLNTSGIYSLLRNPLYLANYLNWLGVVLLLSNKL-
BSSS1_Bact      IRFWAAGTI---TLYR-GEE-VKAKQLVTWGPYAFCRNPLYVGNGLIGLGWCFLSGN--M
BSSSSA1_Ba      IRFWAAGSI---GLYR-GVE-VKASKLTTWGPYAFVRNPLYLGNGLIGLGWAIMAGGLSL
BSSSSu1_Ba      IRFWAAGSI---GLYR-GVE-VKASCLVTWGPYAFVRNPLYLGNGIIGLGWAMMAGG---
BC6_Bacter      LRLWAMRHI--GRSAR-TRR-DKARRLVNTGPYAYTRNPLYIGNHLILTGFCVLSEL--L
BC5_Bacter      LRIWTHLYALPGTSGR-ENY-LRADFLNQDGPYRFVRNPLYLGNFLIVGGLLIVFSNIL-
BCCC1_Bact      IRVHCVGYAGSGTSGR-ESY-LKADSLNTSGLYSLTRNPLYWGNGLIFAGLLIVYAQ--P
BP1_Bacter      IRLWSIAHI--GRSAR-TRK-VKGRKLVASGPYALVRNPLYVGNVTIYLGITAASGL--F
BN1_Bacter      IRTWSSGYI------------RKNQELATTGPYAFTRNPLYLGNGVMGFGFVVMGRSGV-
BPPGG1_Bac      VRFHVSGRSPRGTSTR-GKT-IGAAQLVTCGCYAYSRNPLYVANALLWFGIAALTGI--P
BCC3_Bacte      LRIWALMHI--GPKTR-TRE-ICAERLITSGPYAHCRNPLYLANFLKILGFMVISGNAG-
BA2_Bacter      VRLWGVHHI--GVISR-TRS-ERLGPLVASGPFAILRNPLYAGNIALWVGFALAARL--V
BA1_Bacter      LRIWAVGYA--GSTTR-KSE-LIAPTLVTAGPYAYLKNPLYLGNIITATGFCIMALGKST
BF1_Bacter      IRFWGVGYA--GFATR-TRN-VGASKLVTNGAFSVLRNPLYAGNFFISLGVVIAFNALMP
BCCCCC1_Ba      IRIWAVSYA--GGETR-ARN-VGATALCSSGPYAFVRNPLYLGNMLMYLGIVMSAGAANV
BCD1_Bacte      IRFWAVXYA--GGITR-TTN-VGAXALCSSGPFAYIRNPLYTGNFFIFSGXVLIAGAPNI
BC2_Bacter      LRMWAVSYA--GGITR-TTN-VGAPSLCTSGPYGYTRNPLYIGNMIIYSGVVFVAGSLNI
BPGCE1_Bac      IRAWSVSHA--GRTTRSTAD-YAAPELTTSGPYSFTRNPIYIGNVTIYMGIGIMSMAWFP
BCCCC1_Bac      IRIAGVSYA--GGATR-TRQ-IGANELVTAGPYAYLRHPLYVGNILLYSGASILAGGGLP
BCC1_Bacte      LRIWSVAYA--GHKTR-SRT-LEAEKLIIWGPFARTRNPLYLANMFIYTGATVISNIWLP
BCCCCC2_Ba      IRLWGVAYA--GGATR-TRN-VGANQLVTNGPFGRVRNPLYLGNILMYCGAAVVANTWLP
BC1_Bacter      IRIWGVSYA--GGATR-TRE-VGAPRLVTNGPFAHVRNPLYLGNMLMYTGAAIIPNVWTP
BG1_Bacter      IRLWAVGYA--GSATR-TRH-VGAPALITNGPYGRVRNPLYVGNFVLSLGLCVMAWAWMP
BBB1_Bacte      LRFWGVSIV--GSETRTTGA-VGATNLITDGPFGHVRNPLYVGNIMMYVGCGIMSNALAP
BI1_Bacter      LRLWGVSIA--GSETRTTKE-VGGSNLITSGPFAYVRNPLYLGNIIIYLGVGIMSLAAFP
BCC2_Bacte      IRIWGVGYA--GGETRTTGP-VGGSKLVTNGPYAYVRNPLYIGNMLIYLGFGIMSMALFP
BC3_Bacter      FRFWGVSYA--GSETRTTGK-PGASNLVTQGPFAFVRNPLYIGNIFMYFGVSVMSNSLVP
BC4_Bacter      LRLWSVAYA--GLTTR-GRE-ITAKTLVTSGPYSFVRNPIYLGNFLIGLGYTVALGVLRW
BF2_Bacter      IRIIAVAYI--GGISR-TRK-GTVDNLVTSGPFSRLRNPLYAGNFLLSLGLSCLSGV--W
BPOOPP1_Ba      FRIYSVSFI--GTVSRTRSD-STGQRLVSSGPFAIVRNPLYVGNFFVSVGFSLFSGV--A
BPOOuO1_Ba      FRIYSVAFI--GSISRTRKE-SLGDQLITSGPFKWVRNPLYLGNFFIVLGLAIYSGV--L
                 .                            *       .    .                

Translatio      ------LYITIDFLIGLTEVYRAMDASKTDPNAIMSAPLKANGKHRQIFYE-KPTLKKQD
BLu1_Bacte      ------ILFLIVVLFIIYY-PFVIIGEEKRLIEVHGEEFLDYMKHVPRFIPNPFKLKEPE
BCu1_Bacte      F-----LPVIVSLATLVYY-ERIAAREEEFLEEKFGEEFRLWAARVPAVIP-KFRHYLPP
BV1_Bacter      W-----FLLAFTFWYMLYY-ERIMYAEEEFLISTYGQDYLDFSANTPAVLP-RFKNWTKP
BC7_Bacter      W-----FVSFFILLFWLYY-ERIMFAEEAFLQRTFDEIFLNWAKNTPAIIP-RFSLWKKP
BC8_Bacter      W-----ILCVYVLFFWLYY-ERIILAEEAYLSEKFGDEYLRWADKTPVFFP-NPTLYAPP
B1_Bacteri      W-----VSFITILVFWLYY-ERIIFAEEEYLRRKFGEQYEQWANHVPAFIP-KFSYWIPA
BR1_Bacter      ------ITLIVSSLFAMLY-YKIILVEENFLLQKFKEEYKSYYSNTPRIIP-SFKNWRKP
BSSS1_Bact      W-----AFLVFILFFTGLYGLLVIPHEEKFLAESFKQDFKEYSRCVGRFFPKKLPSSNTI
BSSSSA1_Ba      W--------VFLVSFYIIYCLLIIPYEEGFLQSKFGNEYLSYKDRTGALIVKRWPKMEEI
BSSSSu1_Ba      W-----SIPVFIVAFVLVYCFLIIPYEENFLEEKFGDEYLKYKAKTGSLVPKRLPSKEEV
BC6_Bacter      W-----FIPAALGLCFVFY-NCIVLYEEELLRQRFGEEYLSYMRQTARWIPLPFSALTPD
BC5_Bacter      ------ALFIGISFLIFQY-SFIVLAEEKYLKEKFGNEWLEYKEKVPRFFPKKFFKIQPN
BCCC1_Bact      L-----ALAIFIVFLFLQY-HFIVLAEESFLREQYGPDYEDYSRSVSRWLP-LSGPYAPP
BP1_Bacter      W-----LVPLTLLWFAFQY-HCIVAWEEGILRERQGDAYLDYMSVVPRWMP-MWPQEGLG
BN1_Bacter      ------LLGLFLFAFAFIY-RSTIRQEEERLLEKFGERFSEYVRTVPRFFP-HWPGWPSA
BPPGG1_Bac      L-----LLIPVFLILVFQY-YAIVLAEEEYLRKKFGEEFETYCRNVPRFLP-QLRPWSGR
BCC3_Bacte      ------FALVVAFFYLIEF-STMIPYEEGFLAEKFPDAHRCYREAVPAFIPTLQANSRFA
BA2_Bacter      W-----LAPLILLLLGLQY-HAIVRWEERLLESRLGDAYRAYATRVPRWLP-TLKRRQHQ
BA1_Bacter      FIEKIILFSLFLIFYFIIY-SLIISIEEDYLLKTFGETYKNYSKKVPRIIP-RLKPYTNS
BF1_Bacter      Y-----MVFIYAALYSIQY-YFIVKLEEERLEDVFGDEYRRYKAAVPRFIP-TFRKYEGA
BCCCCC1_Ba      W----LMAATTFAFFFIQY-SLIISLEEETLGKQFGSDYDEYKKNVPAIFP-HFSRWNSS
BCD1_Bacte      W----XMLAVTWIFFLTQY-XLXIYLEEETLVSXFGXEYETYRQHVPRLLP-RFSAWTSD
BC2_Bacter      L----SMLIVTWAFFIIQY-YLIINLEQNTLIDIFGKEYNNYMNNVPIFFP-RLTSWKNK
BPGCE1_Bac      W-----LQLAGLVFFSIQY-HYIIRGEEGFLEKQFGEPYQKFLENVPRVIP-RFTPYNPD
BCCCC1_Bac      Y-----LLYLIIFFFSVQY-AIIVRSEEAKLTELFGEQAVDYINSVPRFFP-RFTPYSKR
BCC1_Bacte      Y-----FVFVVWIYFGIQY-SIIIRMEEAFLAGLFGESYLAYKRRVPRVIP-SPSPKVHC
BCCCCC2_Ba      Y-----LVIFVLIFFGVQY-YFIIRLEEEKLSELFGTEYAEYCQAVPRIIP-RIKNISSA
BC1_Bacter      L-----LIAIVWLYFGFQY-YWIVRLEEEKLTELFGEEYLHYQKVVPRFFP-RITPAQSQ
BG1_Bacter      Y-----MIGIFVTAFGIQY-GLIVSLEEESLRKTFGAQYEAYLASVPRFLP-RFTEYTAG
BBB1_Bacte      W-----LSVAAFLWFALQY-HLIVSREEEHLRQAFGSEYETYVRNVPRFLP-RLSRYRGE
BI1_Bacter      T-----LTLITLLYFIFQY-YMIVSLEEEHLLNVYGDEYKQYKYYVPKFLP-NFKKYRLT
BCC2_Bacte      Y-----FQILGLIYFFVQY-YLIVTLEEEYLSGRFGDEYKLYFENVRRFIP-RLRRYKFA
BC3_Bacter      Y-----LQVLSILYFIFQY-YFIILEEEKQLKELFGEKYTHYFENVNRFLP-KFTAYDEN
BC4_Bacter      E-----VLAIYFIGFFLEY-YLIIRAEESYLEQKFGEEYSRYRASVPRFLPKVFRRYSSA
BF2_Bacter      W-----FLILYLFLFWIQY-IPIVAWEEALLEKKFGEEYLNYKKAVPRFFP-KLGKAGVS
BPOOPP1_Ba      W-----IVAVTAALFFVQY-YFIVKYEESILSKKFGDEYQGYLRKVPAFVPSKLPKLDNI
BPOOuO1_Ba      W-----FCLLTIALFYLQY-HFIVQYEEGLLEKKFGTEYGAYRASVPAWFPKSLPKLSEL
                                          .:                                

Translatio      ALK-------MELENFVASVQGKEKPIVDGKAGREALDIAMQIHDTILEDLH--------
BLu1_Bacte      FYN-------VNVKKYKIAFV--DAMGFFSIYICVQIVNI---LHAAKVIPAYFSIPKCF
BCu1_Bacte      ALP-------F---SWGKALR-REFYGLFAITAGFFVLDV---MEDFWVTGG--LHFDPL
BV1_Bacter      ANS-------F---SFIKIIR-QEKTGILNLFLVIFIFKL---ARFLFTD----DPIEMR
BC7_Bacter      DLP-------F---SFRHVLR-REYPGFFALILSFVYFHA---LREKT------IDIAPF
BC8_Bacter      ALP-------F---SLKTVLR-REYSGFFAVIVVMFLLEV---IGDMFINHTLWVPVEPW
B1_Bacteri      ALP-------F---SFRNVLK-REYSGLFAIIISFVVLEM---FGDLAAEGR--IRLDPM
BR1_Bacter      INK-------F---NVKKSLI-NIKNGLLGISVLFFIINS---IENYKVNSEIINTNWIF
BSSS1_Bact      AGP-------F---RFDVLWR-SERHSFIVTCVGTILFLI---LRWFG------------
BSSSSA1_Ba      KGP-------F---SREVLVK-SERHSLRVTIVGSLLIIS---RLWW-------------
BSSSSu1_Ba      KGP-------F---SFEVLLK-SERHSLHVTVAGTVLLVT---RLWW-------------
BC6_Bacter      S-------------PWLEAFR-RERSTLYGLVAGIAVFAL---EEFILHLIH--------
BC5_Bacter      QRK-------N---SLSKVLI-KEVDTIFNIFTMLFIILLLKINHLFRLSLKEVFPFLLF
BCCC1_Bact      GRP-------F---DLKKVVF-KENDSCFNLLLTALLILAWKESFFSGRVRQPLVFAGAA
BP1_Bacter      TGP-------GY--PFSEVLF-RERDSLLGVIGVTLLLAA---REWARHAGWF-------
BN1_Bacter      EGR-------F---DWGLVMKHREHRTWLGILVVLALMMI---KVS--------------
BPPGG1_Bac      SEP-------FVF-TWKRAIF-KEHDTLYGTLACATIVVT---PVFFSEPSQAVLIAWFG
BCC3_Bacte      AAA-------NF--SLSEALR-SEKRTFASTSLILLTVAL---AAAMRKERVA-------
BA2_Bacter      GHKGNKGHRGKEGFSLTETLF-SERGTLVAIAVGYALLWL---KAQV-------------
BA1_Bacter      SGT-------F---KWNVIFK-AEIHTLIMLIIIILI------MYWKL------------
BF1_Bacter      SDV-------PF--SGAVAIK-NEKKVFVSILIMLIVALL---LNLWKLKAGTAV-----
BCCCCC1_Ba      DNK-------EPA-GIIKTLR-REKRTLQNVAFFFILITL---RTQFFD-----------
BCD1_Bacte      DKR-------RPM-TFMKTLK-TEKRTLQNIVLILLLVII---RQQFV------------
BC2_Bacter      DKY-------VPM-KFSKTIK-TEKXTLQNIILLILXIYF---KHYLK------------
BPGCE1_Bac      GGK-------G---DWGMAFK-SERRSLQAYLLTSLIIVA---IYILR------------
BCCCC1_Bac      VKK-------KA--DVGNALL-SEKSTMIAITVFILLVVV---SVYINF-----------
BCC1_Bacte      HTQ-------NP--DYKASFI-SEKSTFISIMGILLLFGI---RAYFI------------
BCCCCC2_Ba      RPV-------KP--DAGGAFR-SEKSTFLSFATVLLFMVL---KMYFF------------
BC1_Bacter      HPV-------RP--NLWAALK-SEKSTFLSFFTILILFYV---KMRFFTHPS--------
BG1_Bacter      KPA-------PY--DFGAALR-SERRTFQSTAVVAAAIAV---RWYWG------------
BBB1_Bacte      HSF-------HRGPDLARGLA-SETRTLQGFAVVVVLIIA---RYFVR------------
BI1_Bacter      KAN-------QPQLDWIKGLK-SERRTLQAIIIIVLTILI---IWFLQNQAQIKLFSEIF
BCC2_Bacte      SNF-------KF--DIKEALR-SEKRTLQAFFGVTLLNIL---IFFFRNKF---------
BC3_Bacter      KQS-------KINKDIKAAYI-SEKRTFQSIFVSMLMIVL---IYFLINQ----------
BC4_Bacter      ENV-------SP--NFKMALL-SEKSTLLLLLGLYVLFFLR--LSFFFQNPK--------
BF2_Bacter      QGE-------Y---NFKKALK-SERSTLSTVIIIYFIICT---KFFFWNQLTEWVRQ---
BPOOPP1_Ba      DWP-------K---EYSHALK-SEKRTLTTIFVLLGLLMV---LS---------------
BPOOuO1_Ba      EWP-------E---SFNKSLK-SEKRTLSAIAGMLILLIL---FS---------------
                                                                            

Translatio      --------------------------------------------
BLu1_Bacte      FS------------------------------------------
BCu1_Bacte      WTSVFILSAFFFAVMRTWKKRMA------R--------------
BV1_Bacter      WIYGLGIGVIWYLIVKVLQKTTKVLEFD-R--------------
BC7_Bacter      WKKTLVVGIVAYIVFRTLKKKTKFLHVEGR--------------
BC8_Bacter      WLMLLAFGAMVWFTLRSLKKYTRILRVDGR--------------
B1_Bacteri      WMAIFSTGFLFYSILRIFRKKTRLLHANGR--------------
BR1_Bacter      YFLIFTLIFYIYMKLSINSKIKSSN-------------------
BSSS1_Bact      --------------------------------------------
BSSSSA1_Ba      --------------------------------------------
BSSSSu1_Ba      --------------------------------------------
BC6_Bacter      --------------------------------------------
BC5_Bacter      YSPILIIYIFFKVVKIKR--------------------------
BCCC1_Bact      VILILIYIWIKILKKKSAAKAAA---------------------
BP1_Bacter      --------------------------------------------
BN1_Bacter      --------------------------------------------
BPPGG1_Bac      GFAVLTVVWRIVKTLKRQDSRARRNPTPSQPAAVVVQSAHMARA
BCC3_Bacte      --------------------------------------------
BA2_Bacter      --------------------------------------------
BA1_Bacter      --------------------------------------------
BF1_Bacter      --------------------------------------------
BCCCCC1_Ba      --------------------------------------------
BCD1_Bacte      --------------------------------------------
BC2_Bacter      --------------------------------------------
BPGCE1_Bac      --------------------------------------------
BCCCC1_Bac      --------------------------------------------
BCC1_Bacte      --------------------------------------------
BCCCCC2_Ba      --------------------------------------------
BC1_Bacter      --------------------------------------------
BG1_Bacter      --------------------------------------------
BBB1_Bacte      --------------------------------------------
BI1_Bacter      GLR-----------------------------------------
BCC2_Bacte      --------------------------------------------
BC3_Bacter      --------------------------------------------
BC4_Bacter      --------------------------------------------
BF2_Bacter      --------------------------------------------
BPOOPP1_Ba      --------------------------------------------
BPOOuO1_Ba      --------------------------------------------
                                                            
AnaisE
22 Apr 2021 14:42
Non evaluated contribution

C'est à cause de la séquence "BA1_Bacter" qui commence bien avant les autres. Tu peux peut-être l'enelver ou la remplacer par une autre séquence qui correspondra davantage aux autres pour ton alignement.

rachel
22 Apr 2021 15:36
Non evaluated contribution

ah oui ! merci beaucoup Anais 

Meglecz20CTES
22 Apr 2021 15:50
Game master

Merci Anaïs!